Campylobacter lari RM16712

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Campylobacteraceae

Genus

Campylobacter

Description

Campylobacter lari RM16712 is a Gram-negative bacterium characterized by its spirilla shape and a microaerophilic oxygen requirement. The organism typically arranges itself in chains or singles and possesses flagella, which are essential for its mobility, although it is noted that this particular strain exhibits no mobility. The bacterium has a mesophilic temperature range, thriving in moderate temperature conditions. It is free-living, indicating its ability to survive independently in various environments. C. lari RM16712 is noted to have a single replicon and is composed of two membranes, which is characteristic of Gram-negative bacteria. The habitat of C. lari RM16712 is multiple, suggesting it can be found in diverse ecological niches. This versatility in habitat may reflect its adaptability and potential interactions within different environments, possibly contributing to its role in microbial communities. Understanding the traits of Campylobacter lari RM16712, particularly its microaerophilic nature and habitat diversity, can provide insights into its ecological roles and potential implications for human health, as it is a member of a genus known for its association with gastrointestinal infections. The strain is documented under the accession number NZ_CP007778.1, which can aid in further studies exploring its characteristics and interactions within various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyCampylobacteraceae
GenusCampylobacter
SpeciesCampylobacter lari
StrainRM16712

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Campylobacter lari RM16712
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Campylobacter lari RM16712 chromosome, complete genome.

Gene Summary

Adenine Count

552112 bp

Thymine Count

547534 bp

Guanine Count

233542 bp

Cytosine Count

231821 bp

Genome Length

1565009 bp

Protein-coding Genes

1556 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-2-hydroxyacid dehydrogenaseUPTC16712_RS07790Not AvailableNegative1532850 - 153378234376.9
glutathionylspermidine synthase family proteinUPTC16712_RS07795Not AvailableNegative1533782 - 153495444720.5
upf0323 family lipoproteinUPTC16712_RS07800Not AvailableNegative1534964 - 153558121290.7
lyse family transporterUPTC16712_RS07805Not AvailableNegative1535657 - 153626222975.2
30s ribosomal protein s21UPTC16712_RS07810Not AvailableNegative1536305 - 15365178673.84
cytochrome c oxidase accessory protein ccogUPTC16712_RS07815Not AvailablePositive1536703 - 153807652875.3
tetr/acrr family transcriptional regulatorUPTC16712_RS07820Not AvailablePositive1538079 - 153870224272.2
efflux rnd transporter periplasmic adaptor subunitUPTC16712_RS07825Not AvailablePositive1538791 - 153988840124.1
efflux rnd transporter permease subunitUPTC16712_RS07830Not AvailablePositive1539888 - 1543010113836.0
multidrug efflux system cmeabc, outer membrane lipoprotein cmecUPTC16712_RS07835Not AvailablePositive1543003 - 154444554717.8

Displaying genes 1581 – 1590 of 1611 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

479 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da

Displaying 1–10 of 479 metabolites

Health Effects

No health effects information available for this bacterium.