Escherichia coli O118:H16 str. 2009C-4446

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli O118:H16 str. 2009C-4446 is a Gram-negative, rod-shaped bacterium that is facultatively anaerobic, allowing it to thrive in both oxygen-rich and oxygen-poor environments. This strain is characterized by its mobility, which is facilitated by the presence of flagella, and it typically arranges itself in pairs or singles. The optimal growth temperature for E. coli O118:H16 str. 2009C-4446 is 37°C, placing it within the mesophilic temperature range, which is conducive to growth in warm-blooded hosts. This bacterium has a single replicon and is surrounded by two membranes, consistent with the structural characteristics of Gram-negative bacteria. E. coli O118:H16 is known to be free-living, indicating its capability to exist independently in its environment, yet it is also associated with hosts. This dual nature allows it to play diverse ecological roles, potentially including both beneficial and pathogenic interactions depending on the context. The strain's GenBank accession number is JHGP00000000.1, which provides a reference for genetic and genomic studies. Understanding the ecological implications of such strains can aid in assessing their roles within microbial communities, as well as their potential impacts on host organisms and the environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainO118:H16 2009C-4446

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli O118:H16 str. 2009C-4446
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli O118:H16 str. 2009C-4446 contig113, whole genome

Gene Summary

Adenine Count

1351555 bp

Thymine Count

1344104 bp

Guanine Count

1365314 bp

Cytosine Count

1373800 bp

Genome Length

5434788 bp

Protein-coding Genes

4852 genes

Non-Coding Genes

401 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
xylulose kinaseBX23_16855Not AvailableNegative3053260 - 305471452681.4
xylose isomeraseBX23_16860Not AvailableNegative3054786 - 305610849721.7
d-xylose transporter subunit xylfBX23_16865Not AvailablePositive3056474 - 305746635722.1
xylose transporterBX23_16870Not AvailablePositive3057544 - 305908556518.0
sugar abc transporter permeaseBX23_16875Not AvailablePositive3059063 - 306024441033.5
xylr family transcriptional regulatorBX23_16880Not AvailablePositive3060322 - 306150044871.7
mannosyl-glycoprotein endo-beta-n-acetylglucosamidaseBX23_16885Not AvailableNegative3061608 - 306218021501.8
alpha-amylaseBX23_16890Not AvailablePositive3062752 - 306478275771.5
valine--pyruvate aminotransferaseBX23_16895Not AvailablePositive3064960 - 306621346714.9
electron transporterBX23_16900Not AvailableNegative3066365 - 306683817435.1

Displaying genes 3141 – 3150 of 5253 in total

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.