Escherichia coli 2-427-07_S4_C3

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli 2-427-07_S4_C3 is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. This organism is typically found in host-associated habitats, indicating a relationship with a host organism. Its cell arrangement can be observed in pairs or singles, and it possesses flagella, enabling mobility. E. coli 2-427-07_S4_C3 has an optimal growth temperature of 37°C, which aligns with the mesophilic category, suggesting it thrives in moderate temperature ranges suitable for many biological processes. It contains a single replicon and is characterized by a double membrane structure, which is a common feature among Gram-negative bacteria. In terms of its ecological role, E. coli 2-427-07_S4_C3 is described as free-living, indicating it can exist independently in its environment while also having associations with hosts. This dual capability highlights the adaptability of E. coli species in various ecological niches. Understanding the traits of E. coli 2-427-07_S4_C3 contributes to our knowledge of microbial diversity and the ecological dynamics of bacteria in host-associated environments. Its ability to survive in different conditions and its relationship with hosts can have implications for both health and environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strain2-427-07_S4_C3

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli 2-427-07_S4_C3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli 2-427-07_S4_C3 e242707S4C3.contig.226_1, whole

Gene Summary

Adenine Count

1417068 bp

Thymine Count

1416925 bp

Guanine Count

1445530 bp

Cytosine Count

1453404 bp

Genome Length

5732927 bp

Protein-coding Genes

5732 genes

Non-Coding Genes

408 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phop regulatory network yrbl family proteinAD31_3874Not AvailablePositive3727606 - 372823824373.4
monofunctional biosynthetic peptidoglycan transglycosylaseAD31_3875Not AvailableNegative3728235 - 372896327343.1
enhancing lycopene biosynthesis protein 2AD31_3876Not AvailableNegative3728960 - 372961322996.9
aerobic respiration control sensor protein arcbAD31_3877Not AvailableNegative3729843 - 373217987972.0
radical sam superfamily proteinAD31_3878Not AvailableNegative3732275 - 373320434680.6
hypothetical proteinAD31_3879Not AvailableNegative3733469 - 37336065186.78
glutamate synthaseAD31_3880Not AvailablePositive3733786 - 3738339166733.0
glutamate synthaseAD31_3881Not AvailablePositive3738352 - 373977052018.3
hypothetical proteinAD31_3882Not AvailablePositive3739954 - 374108143512.1
hypothetical proteinAD31_3883Not AvailableNegative3741141 - 374160517052.7

Displaying genes 3931 – 3940 of 6140 in total

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.