Dankookia rubra str. JCM30602

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Acetobacterales

Family

Roseomonadaceae

Genus

Dankookia

Description

Dankookia rubra strain JCM30602 is characterized by a singular replicon, which suggests a streamlined genetic structure. The complete genome of this strain is cataloged under the accession number SMSJ00000000.1. This specific genomic information can be critical for researchers aiming to understand the genetic makeup and potential applications of this microorganism. In microbial studies, the number of replicons can provide insights into the organism's genomic stability and adaptability. A single replicon often indicates a simpler genetic organization, which may influence the organism's metabolic processes and ecological interactions. While specific ecological roles or behaviors of Dankookia rubra str. JCM30602 are not detailed in the provided data, the presence of a singular replicon may suggest certain advantages in environments where genomic efficiency is crucial. For example, organisms with streamlined genomes are often better suited to thrive in specialized niches or under specific environmental conditions, potentially leading to less competition for resources. In summary, Dankookia rubra str. JCM30602, with its single replicon and registered genomic data, presents an interesting subject for further research into its biological functions and ecological significance. Understanding the implications of its genetic structure can aid in exploring its potential roles in various microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderAcetobacterales
FamilyRoseomonadaceae
GenusDankookia
SpeciesDankookia rubra
StrainJCM30602

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dankookia rubra strain JCM30602 NODE_498_length_202_cov_36.758242,

Gene Summary

Adenine Count

1165470 bp

Thymine Count

1160521 bp

Guanine Count

2727637 bp

Cytosine Count

2728677 bp

Genome Length

7782305 bp

Protein-coding Genes

7102 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lyse family translocatorE2C06_04745Not AvailablePositive1010375 - 101097720101.1
abc transporter substrate-binding proteinE2C06_04750Not AvailableNegative1010979 - 101181828713.0
carboxymuconolactone decarboxylase family proteinE2C06_04755Not AvailablePositive1011907 - 101252722373.1
sulfite exporter taue/safe family proteinE2C06_04760Not AvailableNegative1012682 - 101343425391.2
cyclase family proteinE2C06_04765Not AvailableNegative1013490 - 101429027036.5
glutathione peroxidaseE2C06_04770Not AvailableNegative1014346 - 101490019836.6
sulfite oxidase-like oxidoreductaseE2C06_04775Not AvailableNegative1014893 - 101556725852.7
ssra-binding protein smpbE2C06_04780Not AvailableNegative1015635 - 101612017840.7
4-hydroxy-tetrahydrodipicolinate synthaseE2C06_04785Not AvailableNegative1016125 - 101700331090.4
lytic transglycosylase domain-containing proteinE2C06_04790Not AvailablePositive1017183 - 101917170875.4

Displaying genes 941 – 950 of 7160 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.