Dankookia rubra str. JCM30602

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Acetobacterales

Family

Roseomonadaceae

Genus

Dankookia

Description

Dankookia rubra strain JCM30602 is characterized by a singular replicon, which suggests a streamlined genetic structure. The complete genome of this strain is cataloged under the accession number SMSJ00000000.1. This specific genomic information can be critical for researchers aiming to understand the genetic makeup and potential applications of this microorganism. In microbial studies, the number of replicons can provide insights into the organism's genomic stability and adaptability. A single replicon often indicates a simpler genetic organization, which may influence the organism's metabolic processes and ecological interactions. While specific ecological roles or behaviors of Dankookia rubra str. JCM30602 are not detailed in the provided data, the presence of a singular replicon may suggest certain advantages in environments where genomic efficiency is crucial. For example, organisms with streamlined genomes are often better suited to thrive in specialized niches or under specific environmental conditions, potentially leading to less competition for resources. In summary, Dankookia rubra str. JCM30602, with its single replicon and registered genomic data, presents an interesting subject for further research into its biological functions and ecological significance. Understanding the implications of its genetic structure can aid in exploring its potential roles in various microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderAcetobacterales
FamilyRoseomonadaceae
GenusDankookia
SpeciesDankookia rubra
StrainJCM30602

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dankookia rubra strain JCM30602 NODE_498_length_202_cov_36.758242,

Gene Summary

Adenine Count

1165470 bp

Thymine Count

1160521 bp

Guanine Count

2727637 bp

Cytosine Count

2728677 bp

Genome Length

7782305 bp

Protein-coding Genes

7102 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
extracellular solute-binding proteinE2C06_05555Not AvailableNegative1176968 - 117800836995.0
gmc family oxidoreductaseE2C06_05560Not AvailableNegative1178330 - 117989856778.8
gluconate 2-dehydrogenase subunit 3 family proteinE2C06_05565Not AvailableNegative1179901 - 118045220304.1
lactoylglutathione lyaseE2C06_05570Not AvailableNegative1180479 - 118087414951.9
aryl-sulfate sulfotransferaseE2C06_05575Not AvailableNegative1180956 - 118126111288.4
aldolaseE2C06_05580Not AvailableNegative1181313 - 118210427313.0
hypothetical proteinE2C06_05585Not AvailableNegative1182179 - 118358849948.7
cisplatin damage response atp-dependent dna ligaseE2C06_05590Not AvailableNegative1184181 - 118580359629.5
ligase-associated dna damage response exonucleaseE2C06_05595Not AvailableNegative1185800 - 118684037336.9
pas domain s-box proteinE2C06_05600Not AvailablePositive1187032 - 118806637537.6

Displaying genes 1101 – 1110 of 7160 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.