Xanthomonas phaseoli pv. syngonii LMG 9055

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas phaseoli pv. syngonii LMG 9055 is a rod-shaped bacterium characterized by the presence of flagella, which contribute to its motility. This strain has a single replicon, indicating a streamlined genetic organization that is often associated with bacterial adaptability and efficiency. The accession number for this strain is JPUO00000000.2, which serves as a reference for genomic and taxonomic studies. This bacterium is known to be a pathogen, specifically affecting various plants, and is part of the larger Xanthomonadaceae family, which is recognized for its agricultural significance. The pathogenicity of Xanthomonas species often hinges on their ability to produce exopolysaccharides and other virulence factors, though specific details regarding the virulence mechanisms of LMG 9055 are not provided in the data. Understanding the characteristics of Xanthomonas phaseoli pv. syngonii LMG 9055 can provide insight into its ecological role, particularly in agricultural settings where it may influence crop health and yield. The presence of flagella suggests a capacity for movement towards favorable environments or hosts, which could enhance its survival and pathogenic potential in various ecological niches. Overall, the traits of this bacterium underscore its importance in the study of plant-pathogen interactions and highlight the need for ongoing research into effective management strategies in agriculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas phaseoli
Strainpv. syngonii LMG 9055

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Xanthomonas phaseoli pv. syngonii LMG 9055
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas phaseoli pv. syngonii LMG 9055


Gene Summary

Adenine Count

872071 bp

Thymine Count

875482 bp

Guanine Count

1609637 bp

Cytosine Count

1614516 bp

Genome Length

4971706 bp

Protein-coding Genes

3790 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinIA54_001380Not AvailableNegative15 - 51518851.1
Ncrna_class:otherNot AvailableNot AvailablePositive960 - 1035Not Available
Ncrna_class:otherNot AvailableNot AvailablePositive1674 - 1748Not Available
Ncrna_class:otherNot AvailableNot AvailablePositive2112 - 2187Not Available
abc transporter atp-binding proteinIA54_001385A0A0H2VBH0Negative708 - 262769860.9
ligand-gated channelIA54_001390Not AvailablePositive2808 - 519584463.5
Ncrna_class:otherNot AvailableNot AvailablePositive3280 - 3355Not Available
Ncrna_class:otherNot AvailableNot AvailablePositive4971 - 5047Not Available
Ncrna_class:otherNot AvailableNot AvailablePositive5098 - 5173Not Available
Ncrna_class:otherNot AvailableNot AvailablePositive5623 - 5699Not Available

Displaying genes 1 – 10 of 3866 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

222 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da

Displaying 1–10 of 222 metabolites

Health Effects

No health effects information available for this bacterium.