Vibrio casei

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio casei is characterized by having a single replicon, which indicates a streamlined genomic structure. This trait may contribute to its adaptability and efficiency in various environments. The organism is cataloged under the accession number FUKS00000000.1, which aids in the identification and classification of its genetic material within microbial databases. The ecological role of Vibrio casei may be significant, particularly in aquatic environments where members of the Vibrio genus are commonly found. Vibrio species are known for their diverse metabolic capabilities, which often allow them to occupy various ecological niches, including marine and estuarine habitats. The presence of a single replicon may suggest a specific evolutionary strategy that enables Vibrio casei to thrive in these environments, possibly through efficient resource utilization or rapid adaptability to changing conditions. In conclusion, while specific ecological interactions and physiological traits of Vibrio casei are not detailed in the provided information, its genetic characteristics, such as the single replicon, indicate potential ecological adaptations that could be explored further in future research. Understanding these traits may offer insights into the organism's role in its ecosystem and its interactions with other microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio casei
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio casei
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio casei strain JB196 genome assembly, contig: Scaffold51,

Gene Summary

Adenine Count

1167277 bp

Thymine Count

1149094 bp

Guanine Count

779715 bp

Cytosine Count

797728 bp

Genome Length

3893814 bp

Protein-coding Genes

3520 genes

Non-Coding Genes

103 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptide deformylaseFM109_03950Not AvailableNegative841275 - 84179019525.6
uncharacterized protein with lysm domain, cog1652FM109_03955Not AvailablePositive841922 - 84307042254.8
rossmann fold nucleotide-binding protein smf possibly involved in dna uptakeFM109_03960Not AvailablePositive843085 - 84422741106.2
protein of unknown function smgFM109_03965Not AvailablePositive844262 - 84473218231.9
similar to c-terminal zn-finger domain of dna topoisomerase iFM109_03970Not AvailablePositive844748 - 84535322707.3
phosphoribosylaminoimidazole carboxylase atpase subunitFM109_03975Not AvailableNegative845397 - 84652141138.6
phosphoribosylaminoimidazole carboxylase catalytic subunitFM109_03980Not AvailableNegative846527 - 84701216692.3
tsac protein (yrdc domain) required for threonylcarbamoyladenosine t(6)a37 modification in trnaFM109_03985Not AvailablePositive847246 - 84780620388.5
coproporphyrinogen iii oxidase, aerobicFM109_03990Not AvailablePositive847810 - 84871234497.5
shikimate 5-dehydrogenase i alphaFM109_03995Not AvailablePositive848735 - 84957130459.3

Displaying genes 861 – 870 of 3623 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.