Sphingobacterium sp. JB170

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Sphingobacterium

Description

Sphingobacterium sp. JB170 is characterized as a rod-shaped bacterium. It possesses a single replicon, indicating its genetic structure is organized around one main circular DNA molecule. The genomic data for this strain is accessible under the accession number FUKU00000000.1. This species is part of the Sphingobacterium genus, which is known for its ability to degrade complex organic compounds, often found in various environments. The rod shape of Sphingobacterium sp. JB170 suggests it may have adaptations for motility or biofilm formation, traits that can enhance its survival in diverse ecological niches. The presence of only one replicon is characteristic of many bacteria and may suggest a streamlined genetic organization, which can contribute to efficient replication and resource management under varying environmental conditions. The ecological significance of Sphingobacterium sp. JB170 may lie in its role in nutrient cycling and organic matter decomposition in its habitat. In summary, Sphingobacterium sp. JB170's rod shape and single replicon structure highlight its potential adaptability and ecological function, particularly in the degradation of organic materials, contributing to the health and balance of microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusSphingobacterium
SpeciesSphingobacterium sp. JB170
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Sphingobacterium sp. JB170
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobacterium sp. JB170 genome assembly, contig: Scaffold78,

Gene Summary

Adenine Count

1288561 bp

Thymine Count

1263736 bp

Guanine Count

910797 bp

Cytosine Count

938610 bp

Genome Length

4401704 bp

Protein-coding Genes

4094 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
octanoate-[acyl-carrier-protein]-protein-n- octan oyltransferaseFM107_02090Not AvailablePositive440404 - 44110226578.5
putative outer membrane protein, probably involved in nutrient bindingFM107_02095Not AvailableNegative441217 - 44267155046.5
tonb family protein / tonb-dependent receptorFM107_02100Not AvailableNegative442724 - 445864114589.0
putative anti-sigma factorFM107_02105Not AvailableNegative445930 - 44700040141.8
rna polymerase ecf-type sigma factorFM107_02110Not AvailablePositive447191 - 44779323486.5
inosine-uridine preferring nucleoside hydrolaseFM107_02115Not AvailableNegative447892 - 44889636767.0
hypothetical proteinFM107_02120Not AvailablePositive449023 - 4491454432.4
cog3866 pectate lyaseFM107_02125Not AvailableNegative449417 - 45083251055.3
transcriptional regulatorFM107_02130Not AvailablePositive451613 - 45192111281.0
hipa proteinFM107_02135Not AvailablePositive451918 - 45314745177.0

Displaying genes 421 – 430 of 4152 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.