Methanosarcina mazei LYC

CocciNon-motileAnaerobe

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanomicrobia

Order

Methanosarcinales

Family

Methanosarcinaceae

Genus

Methanosarcina

Description

Methanosarcina mazei LYC is a free-living anaerobic microbe classified as a lithotroph, indicating its ability to derive energy from inorganic compounds. This organism is characterized by its cocci shape and a single membrane structure. It has no mobility and does not possess flagella, which influences its ecological interactions within its habitat. The optimal growth temperature for Methanosarcina mazei LYC is 30°C, placing it within the mesophilic temperature range. This suggests that it thrives in environments with moderate temperatures, although specific habitat details are not provided. The organism has a single replicon, which is a notable genetic feature that can impact its replication and genetic stability. Given its anaerobic nature and lithotrophic energy source, Methanosarcina mazei LYC plays a significant role in biogeochemical cycles, particularly in environments where organic matter decomposition occurs under low-oxygen conditions. The ability to metabolize inorganic substrates may contribute to methane production, which is essential in various ecological contexts, including wetlands and anaerobic digesters. Overall, Methanosarcina mazei LYC exemplifies the diverse adaptations of microorganisms to anaerobic environments and highlights the importance of such organisms in methane generation and nutrient cycling in their respective ecosystems. The accession number for this strain is NZ_CP009513.1, which can be used for further research and genetic studies.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanomicrobia
OrderMethanosarcinales
FamilyMethanosarcinaceae
GenusMethanosarcina
SpeciesMethanosarcina mazei
StrainLYC

Profile

Physiology
Gram staining propertiesNot Available
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceLithotroph
PathogenicityNot Available

Genome Summary

Methanosarcina mazei LYC chromosome, complete genome.

Gene Summary

Adenine Count

1199768 bp

Thymine Count

1235069 bp

Guanine Count

857474 bp

Cytosine Count

862033 bp

Genome Length

4154344 bp

Protein-coding Genes

3526 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
endonuclease iii domain-containing proteinMSMAL_RS00220Not AvailablePositive49515 - 5013223601.8
bifunctional 5,6,7,8-tetrahydromethanopterin hydro-lyase/3-hexulose-6-phosphate synthaseMSMAL_RS00225Not AvailablePositive50436 - 5161442462.5
triose-phosphate isomeraseMSMAL_RS00230Not AvailablePositive51664 - 5233222940.8
class i sam-dependent methyltransferaseMSMAL_RS00235Not AvailablePositive52671 - 5341728464.6
heat repeat domain-containing proteinMSMAL_RS00240Not AvailableNegative53564 - 5509955173.8
prephenate dehydrogenaseMSMAL_RS00245Not AvailableNegative55174 - 5659252643.9
shikimate dehydrogenaseMSMAL_RS00250Not AvailableNegative56589 - 5743129621.1
type i 3-dehydroquinate dehydrataseMSMAL_RS00255Not AvailableNegative57428 - 5815626182.0
3-dehydroquinate synthase iiMSMAL_RS00260Not AvailableNegative58217 - 5935941165.5
2-amino-3,7-dideoxy-d-threo-hept-6-ulosonate synthaseMSMAL_RS00265Not AvailableNegative59500 - 6029728640.8

Displaying genes 41 – 50 of 3591 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.