Methanosarcina horonobensis HB-1 = JCM 15518

Cocci

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanomicrobia

Order

Methanosarcinales

Family

Methanosarcinaceae

Genus

Methanosarcina

Description

Methanosarcina horonobensis HB-1, also known as JCM 15518, is a species of cocci-shaped methanogenic archaeon. It is characterized by the presence of flagella, which may facilitate its motility in various environments. This organism possesses a single replicon, indicating a streamlined genomic structure conducive to its metabolic processes. The genome of Methanosarcina horonobensis is documented under the accession number NZ_CP009516.1, providing a reference for its genetic information and helping to delineate its phylogenetic relationships within the Methanosarcina genus. As a methanogen, this archaeon plays a significant role in the carbon cycle, contributing to methane production through the anaerobic digestion of organic matter. In ecological terms, Methanosarcina horonobensis is likely to inhabit anaerobic environments, such as sediments and the digestive tracts of ruminants, where it contributes to the degradation of complex organic compounds. Its ability to produce methane not only impacts energy flow within these ecosystems but also has implications for greenhouse gas emissions. Understanding the traits and ecological roles of Methanosarcina horonobensis can provide insights into the management of methane production in both natural and engineered systems.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanomicrobia
OrderMethanosarcinales
FamilyMethanosarcinaceae
GenusMethanosarcina
SpeciesMethanosarcina horonobensis
StrainHB-1 = JCM 15518

Profile

Physiology
Gram staining propertiesNot Available
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Methanosarcina horonobensis HB-1 = JCM 15518 strain HB-1

Gene Summary

Adenine Count

1463604 bp

Thymine Count

1481764 bp

Guanine Count

1033986 bp

Cytosine Count

1039253 bp

Genome Length

5018607 bp

Protein-coding Genes

4466 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter atp-binding proteinMSHOH_RS02265Q3ATR5Positive526165 - 52687526164.3
hypothetical proteinMSHOH_RS02270Not AvailablePositive527067 - 5272737680.26
marr family winged helix-turn-helix transcriptional regulatorMSHOH_RS02275O31472Positive527264 - 52781821276.7
coenzyme f420 hydrogenase/dehydrogenase, beta subunit c-terminal domainMSHOH_RS02280Q58744Negative527884 - 52892137298.1
hypothetical proteinMSHOH_RS02285Q58745Negative528928 - 52967126452.0
glutamate synthase-related proteinMSHOH_RS02290Q58746Negative529674 - 53118554384.0
glutamine amidotransferase family proteinMSHOH_RS02295P58018Negative531182 - 53223439377.9
type i glutamate--ammonia ligaseMSHOH_RS02300Q8PY99Negative533029 - 53437250615.4
hypothetical proteinMSHOH_RS25830Not AvailablePositive534866 - 5349342579.37
duf1059 domain-containing proteinMSHOH_RS02305Not AvailableNegative535193 - 5354208522.21

Displaying genes 481 – 490 of 4535 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

172 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001140cyclohexyl isocyanideC7H11NChemical structure of cyclohexyl isocyanideNot available
Average109.1689Da
Monoisotopic109.089149357Da

Displaying 1–10 of 172 metabolites

Health Effects

No health effects information available for this bacterium.