Methanosarcina horonobensis HB-1 = JCM 15518

Cocci

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanomicrobia

Order

Methanosarcinales

Family

Methanosarcinaceae

Genus

Methanosarcina

Description

Methanosarcina horonobensis HB-1, also known as JCM 15518, is a species of cocci-shaped methanogenic archaeon. It is characterized by the presence of flagella, which may facilitate its motility in various environments. This organism possesses a single replicon, indicating a streamlined genomic structure conducive to its metabolic processes. The genome of Methanosarcina horonobensis is documented under the accession number NZ_CP009516.1, providing a reference for its genetic information and helping to delineate its phylogenetic relationships within the Methanosarcina genus. As a methanogen, this archaeon plays a significant role in the carbon cycle, contributing to methane production through the anaerobic digestion of organic matter. In ecological terms, Methanosarcina horonobensis is likely to inhabit anaerobic environments, such as sediments and the digestive tracts of ruminants, where it contributes to the degradation of complex organic compounds. Its ability to produce methane not only impacts energy flow within these ecosystems but also has implications for greenhouse gas emissions. Understanding the traits and ecological roles of Methanosarcina horonobensis can provide insights into the management of methane production in both natural and engineered systems.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanomicrobia
OrderMethanosarcinales
FamilyMethanosarcinaceae
GenusMethanosarcina
SpeciesMethanosarcina horonobensis
StrainHB-1 = JCM 15518

Profile

Physiology
Gram staining propertiesNot Available
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Methanosarcina horonobensis HB-1 = JCM 15518 strain HB-1

Gene Summary

Adenine Count

1463604 bp

Thymine Count

1481764 bp

Guanine Count

1033986 bp

Cytosine Count

1039253 bp

Genome Length

5018607 bp

Protein-coding Genes

4466 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna 3'-terminal phosphate cyclaseMSHOH_RS00095Q8PXC4Negative23290 - 2435138208.7
fad-dependent oxidoreductaseMSHOH_RS00100Q58065Negative24521 - 2601153340.0
dna primase dnagMSHOH_RS00105Q8PXC6Positive27427 - 2899557482.9
upf0058 family proteinMSHOH_RS00110Not AvailablePositive29424 - 296578853.6
ribosomal protein s18-alanine n-acetyltransferaseMSHOH_RS00115Not AvailableNegative29641 - 3019521409.6
archaeosine synthase subunit alphaMSHOH_RS00120Q8TH90Negative30242 - 3211969067.9
fad-binding oxidoreductaseMSHOH_RS00125P94535Positive32395 - 3376549046.6
(fe-s)-binding proteinMSHOH_RS00130A0A0E3NEE1Positive33771 - 3493743119.0
hypothetical proteinMSHOH_RS00135Not AvailablePositive35310 - 355679509.39
hypothetical proteinMSHOH_RS00140Not AvailablePositive35610 - 3589110414.5

Displaying genes 31 – 40 of 4535 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

172 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001140cyclohexyl isocyanideC7H11NChemical structure of cyclohexyl isocyanideNot available
Average109.1689Da
Monoisotopic109.089149357Da

Displaying 1–10 of 172 metabolites

Health Effects

No health effects information available for this bacterium.