Methanosarcina sp. MTP4

Cocci

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanomicrobia

Order

Methanosarcinales

Family

Methanosarcinaceae

Genus

Methanosarcina

Description

Methanosarcina sp. MTP4 is a cocci-shaped archaeon characterized by the presence of flagella. This feature suggests a potential for motility, which may play a role in its ecological interactions within its environment. Methanosarcina species are known for their versatility in metabolism, particularly in anaerobic conditions, where they can utilize a variety of substrates for methanogenesis. This strain possesses a single replicon, which is indicative of its genetic organization. The accession number NZ_CP009505.1 allows for the identification and retrieval of its genomic data, which can be essential for further research into its metabolic pathways and ecological roles. Given its shape and motility, Methanosarcina sp. MTP4 may have specific adaptations that allow it to thrive in its habitat, likely involving the degradation of organic materials and the production of methane as a byproduct. This process not only contributes to carbon cycling but also impacts the greenhouse gas dynamics in its ecosystem. Understanding the particular traits and capabilities of Methanosarcina sp. MTP4 could provide insights into its role in anaerobic environments and its potential applications in biogas production and waste management.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanomicrobia
OrderMethanosarcinales
FamilyMethanosarcinaceae
GenusMethanosarcina
SpeciesMethanosarcina sp. MTP4
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Methanosarcina sp. MTP4 chromosome, complete genome.

Gene Summary

Adenine Count

1142783 bp

Thymine Count

1134348 bp

Guanine Count

966716 bp

Cytosine Count

967621 bp

Genome Length

4211468 bp

Protein-coding Genes

3494 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
signal recognition particle protein srp54MSMTP_RS00360Q8THD0Negative79387 - 8070948629.7
Trna-metNot AvailableNot AvailablePositive81035 - 81109Not Available
Trna-metNot AvailableNot AvailablePositive81418 - 81492Not Available
hypothetical proteinMSMTP_RS00375Not AvailablePositive81739 - 819306732.0
protease inhibitor i42 family proteinMSMTP_RS00380P25277Negative82086 - 8295231180.2
winged helix-turn-helix domain-containing proteinMSMTP_RS00385Not AvailableNegative83044 - 8385931832.7
phosphoribosyltransferaseMSMTP_RS00390Not AvailablePositive84372 - 8504625937.3
zn-ribbon domain-containing proteinMSMTP_RS00395Not AvailablePositive85283 - 8574717487.3
hypothetical proteinMSMTP_RS00400Not AvailablePositive86132 - 8711235653.5
nitrous oxide reductase family maturation protein nosdMSMTP_RS17765Not AvailablePositive87243 - 8895562627.6

Displaying genes 71 – 80 of 3557 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

175 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000515mycothioneC34H58N4O24S2Chemical structure of mycothioneNot available
Average970.96Da
Monoisotopic970.2882411Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da

Displaying 1–10 of 175 metabolites

Health Effects

No health effects information available for this bacterium.