Mannheimia varigena USDA-ARS-USMARC-1296

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Mannheimia

Description

Mannheimia varigena USDA-ARS-USMARC-1296 is a Gram-negative bacterium characterized by its rod-shaped morphology. This microbial species is notable for possessing a single replicon, which is an important trait as it relates to its genetic stability and replication processes. The genomic information for Mannheimia varigena is available under the accession number NZ_CP006943.1. This accession provides insights into the organism's genetic makeup and potential functional capabilities, although specific details about gene content and metabolic pathways are not provided in the current data. Mannheimia varigena is of particular interest due to its ecological role, as it is commonly associated with ruminant animals, particularly in the context of respiratory infections. Understanding the genetic characteristics and behavior of this bacterium can contribute to better management strategies in livestock health. The presence of a single replicon may influence its adaptability and interactions within the host environment, making it a subject for further research in microbial ecology and host-pathogen dynamics. In conclusion, Mannheimia varigena USDA-ARS-USMARC-1296, with its Gram-negative, rod-shaped structure and unique genomic attributes, plays a significant role in the health of ruminants, highlighting the importance of studying such organisms for agricultural microbiology and veterinary science.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusMannheimia
SpeciesMannheimia varigena
StrainUSDA-ARS-USMARC-1296

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Mannheimia varigena USDA-ARS-USMARC-1296 chromosome, complete

Gene Summary

Adenine Count

667902 bp

Thymine Count

668304 bp

Guanine Count

455835 bp

Cytosine Count

453197 bp

Genome Length

2245238 bp

Protein-coding Genes

2011 genes

Non-Coding Genes

147 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
suppressor of fused domain proteinX808_RS04855Not AvailablePositive1017327 - 101809129878.2
glutamine-hydrolyzing gmp synthaseX808_RS04860Not AvailablePositive1018100 - 101967158217.9
bifunctional udp-n-acetylglucosamine diphosphorylase/glucosamine-1-phosphate n-acetyltransferase glmuX808_RS04865Not AvailableNegative1019787 - 102115148939.9
calcium:proton antiporterX808_RS04870Not AvailablePositive1021367 - 102245237921.0
23s rrna (uridine(2552)-2'-o)-methyltransferase rlmeX808_RS04875Not AvailablePositive1022566 - 102319223435.4
atp-dependent zinc metalloprotease ftshX808_RS04880Not AvailablePositive1023311 - 102525471071.2
histidinol-phosphate transaminaseX808_RS04885Not AvailablePositive1025454 - 102654840418.4
3-phosphoshikimate 1-carboxyvinyltransferaseX808_RS04890Not AvailablePositive1026592 - 102789047141.0
tigr04211 family sh3 domain-containing proteinX808_RS04895Not AvailableNegative1027946 - 102855423019.7
inorganic phosphate transporterX808_RS04900Not AvailableNegative1028618 - 102988343732.4

Displaying genes 981 – 990 of 2158 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.