Mannheimia varigena USDA-ARS-USMARC-1296

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Mannheimia

Description

Mannheimia varigena USDA-ARS-USMARC-1296 is a Gram-negative bacterium characterized by its rod-shaped morphology. This microbial species is notable for possessing a single replicon, which is an important trait as it relates to its genetic stability and replication processes. The genomic information for Mannheimia varigena is available under the accession number NZ_CP006943.1. This accession provides insights into the organism's genetic makeup and potential functional capabilities, although specific details about gene content and metabolic pathways are not provided in the current data. Mannheimia varigena is of particular interest due to its ecological role, as it is commonly associated with ruminant animals, particularly in the context of respiratory infections. Understanding the genetic characteristics and behavior of this bacterium can contribute to better management strategies in livestock health. The presence of a single replicon may influence its adaptability and interactions within the host environment, making it a subject for further research in microbial ecology and host-pathogen dynamics. In conclusion, Mannheimia varigena USDA-ARS-USMARC-1296, with its Gram-negative, rod-shaped structure and unique genomic attributes, plays a significant role in the health of ruminants, highlighting the importance of studying such organisms for agricultural microbiology and veterinary science.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusMannheimia
SpeciesMannheimia varigena
StrainUSDA-ARS-USMARC-1296

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Mannheimia varigena USDA-ARS-USMARC-1296 chromosome, complete

Gene Summary

Adenine Count

667902 bp

Thymine Count

668304 bp

Guanine Count

455835 bp

Cytosine Count

453197 bp

Genome Length

2245238 bp

Protein-coding Genes

2011 genes

Non-Coding Genes

147 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional trna pseudouridine(32) synthase/23s rrna pseudouridine(746) synthase rluaX808_RS03815Not AvailablePositive797704 - 79837225257.7
1,6-anhydro-n-acetylmuramyl-l-alanine amidase ampdX808_RS03820Not AvailableNegative798395 - 79894621075.0
23s rrna (adenine(2030)-n(6))-methyltransferase rlmjX808_RS03825Not AvailablePositive799006 - 79984832384.2
duf4105 domain-containing proteinX808_RS03830Not AvailablePositive799860 - 80089740766.2
yqha family proteinX808_RS03835Not AvailablePositive800906 - 80139118125.0
orotate phosphoribosyltransferaseX808_RS03840Not AvailablePositive801450 - 80209123715.4
phosphoenolpyruvate carboxylaseX808_RS03845Not AvailableNegative802138 - 80477799526.9
fkbp-type peptidyl-prolyl cis-trans isomeraseX808_RS03850Not AvailablePositive804950 - 80535115008.2
ygcg family proteinX808_RS03855Not AvailableNegative805446 - 80631230717.4
tpm domain-containing proteinX808_RS03860Not AvailableNegative806309 - 80676717598.1

Displaying genes 841 – 850 of 2158 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.