Mannheimia varigena USDA-ARS-USMARC-1296

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Mannheimia

Description

Mannheimia varigena USDA-ARS-USMARC-1296 is a Gram-negative bacterium characterized by its rod-shaped morphology. This microbial species is notable for possessing a single replicon, which is an important trait as it relates to its genetic stability and replication processes. The genomic information for Mannheimia varigena is available under the accession number NZ_CP006943.1. This accession provides insights into the organism's genetic makeup and potential functional capabilities, although specific details about gene content and metabolic pathways are not provided in the current data. Mannheimia varigena is of particular interest due to its ecological role, as it is commonly associated with ruminant animals, particularly in the context of respiratory infections. Understanding the genetic characteristics and behavior of this bacterium can contribute to better management strategies in livestock health. The presence of a single replicon may influence its adaptability and interactions within the host environment, making it a subject for further research in microbial ecology and host-pathogen dynamics. In conclusion, Mannheimia varigena USDA-ARS-USMARC-1296, with its Gram-negative, rod-shaped structure and unique genomic attributes, plays a significant role in the health of ruminants, highlighting the importance of studying such organisms for agricultural microbiology and veterinary science.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusMannheimia
SpeciesMannheimia varigena
StrainUSDA-ARS-USMARC-1296

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Mannheimia varigena USDA-ARS-USMARC-1296 chromosome, complete

Gene Summary

Adenine Count

667902 bp

Thymine Count

668304 bp

Guanine Count

455835 bp

Cytosine Count

453197 bp

Genome Length

2245238 bp

Protein-coding Genes

2011 genes

Non-Coding Genes

147 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
crispr-associated endonuclease cas2X808_RS07035Not AvailableNegative1496642 - 149693511500.9
type i-c crispr-associated endonuclease cas1cX808_RS07040Not AvailableNegative1496985 - 149799838215.2
hypothetical proteinX808_RS07045Not AvailableNegative1498044 - 149838513534.0
hypothetical proteinX808_RS07050Not AvailableNegative1498455 - 14986377225.74
rna-directed dna polymeraseX808_RS07055Not AvailableNegative1498646 - 150012457179.5
crispr-associated protein cas4X808_RS07060Not AvailableNegative1500157 - 150082825123.4
type i-c crispr-associated protein cas7/csd2X808_RS07065Not AvailableNegative1500828 - 150169132723.1
type i-c crispr-associated protein cas8c/csd1X808_RS07070Not AvailableNegative1501701 - 150347965871.5
type i-c crispr-associated protein cas5cX808_RS07075Not AvailableNegative1503476 - 150415325884.3
duf4231 domain-containing proteinX808_RS07080Not AvailableNegative1504346 - 150520933077.4

Displaying genes 1421 – 1430 of 2158 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.