Mannheimia varigena USDA-ARS-USMARC-1296

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Mannheimia

Description

Mannheimia varigena USDA-ARS-USMARC-1296 is a Gram-negative bacterium characterized by its rod-shaped morphology. This microbial species is notable for possessing a single replicon, which is an important trait as it relates to its genetic stability and replication processes. The genomic information for Mannheimia varigena is available under the accession number NZ_CP006943.1. This accession provides insights into the organism's genetic makeup and potential functional capabilities, although specific details about gene content and metabolic pathways are not provided in the current data. Mannheimia varigena is of particular interest due to its ecological role, as it is commonly associated with ruminant animals, particularly in the context of respiratory infections. Understanding the genetic characteristics and behavior of this bacterium can contribute to better management strategies in livestock health. The presence of a single replicon may influence its adaptability and interactions within the host environment, making it a subject for further research in microbial ecology and host-pathogen dynamics. In conclusion, Mannheimia varigena USDA-ARS-USMARC-1296, with its Gram-negative, rod-shaped structure and unique genomic attributes, plays a significant role in the health of ruminants, highlighting the importance of studying such organisms for agricultural microbiology and veterinary science.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusMannheimia
SpeciesMannheimia varigena
StrainUSDA-ARS-USMARC-1296

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Mannheimia varigena USDA-ARS-USMARC-1296 chromosome, complete

Gene Summary

Adenine Count

667902 bp

Thymine Count

668304 bp

Guanine Count

455835 bp

Cytosine Count

453197 bp

Genome Length

2245238 bp

Protein-coding Genes

2011 genes

Non-Coding Genes

147 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
integration host factor subunit betaX808_RS05005Not AvailablePositive1050695 - 105097610455.8
lapa family proteinX808_RS05010Not AvailablePositive1050999 - 105128610639.6
lipopolysaccharide assembly protein lapbX808_RS05015Not AvailablePositive1051290 - 105248346291.2
orotidine-5'-phosphate decarboxylaseX808_RS05020Not AvailablePositive1052504 - 105319925511.1
stress response translation initiation inhibitor ycihX808_RS05025Not AvailablePositive1053267 - 105357811235.8
bifunctional udp-sugar hydrolase/5'-nucleotidase ushaX808_RS05030Not AvailableNegative1053619 - 105526260626.4
diacylglycerol kinaseX808_RS05035Not AvailableNegative1055301 - 105566313347.7
serine/threonine transporter ssttX808_RS05040Not AvailablePositive1055918 - 105712641867.1
dna internalization-related competence protein comec/rec2X808_RS05045Not AvailablePositive1057259 - 105954487133.7
nadh oxidoreductaseX808_RS05050Not AvailableNegative1059573 - 106059236929.2

Displaying genes 1011 – 1020 of 2158 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.