Salinicoccus sediminis str. SV-16

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Staphylococcaceae

Genus

Salinicoccus

Description

Salinicoccus sediminis strain SV-16 is a Gram-positive bacterium characterized by a single replicon. This organism is part of the Salinicoccus genus, which is known for its halophilic properties, allowing it to thrive in saline environments. The strain SV-16 was sequenced, and its genomic data can be accessed under the accession number LAYZ00000000.1. The classification as Gram-positive indicates that Salinicoccus sediminis possesses a thick peptidoglycan layer in its cell wall, which is a characteristic feature of this group of bacteria. The presence of a single replicon suggests a streamlined genomic organization, which may contribute to its adaptability in extreme conditions such as high salinity. Understanding the traits of Salinicoccus sediminis str. SV-16 can provide insights into its ecological role in saline ecosystems. As a halophilic microorganism, it may play a vital role in nutrient cycling and the overall dynamics of microbial communities in environments such as salt flats, saline lakes, or coastal areas. Furthermore, studying its genomic features may illuminate mechanisms of salt tolerance and survival strategies that could be applicable in biotechnological processes or environmental management strategies in saline habitats.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyStaphylococcaceae
GenusSalinicoccus
SpeciesSalinicoccus sediminis
StrainSV-16

Profile

Physiology
Gram staining propertiesGram-positive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Salinicoccus sediminis strain SV-16 scf7180000000819, whole genome

Gene Summary

Adenine Count

664934 bp

Thymine Count

664262 bp

Guanine Count

626373 bp

Cytosine Count

635715 bp

Genome Length

2591284 bp

Protein-coding Genes

2489 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinWN59_01100Q5WHG3Positive220079 - 22106536948.4
hypothetical proteinWN59_01105A7X2Y2Positive221071 - 22165522008.6
molecular chaperone dnakWN59_01110B9E6X1Positive221703 - 22354466421.8
molecular chaperone dnajWN59_01115Q8CP18Positive223640 - 22476740962.6
ribosomal protein l11 methyltransferaseWN59_01120B9DNJ8Positive224770 - 22570235364.6
hypothetical proteinWN59_01125P54461Positive225707 - 22644427599.6
30s ribosomal protein s12 methylthiotransferaseWN59_01130P54462Positive226516 - 22786851482.6
deoxyribose-phosphate aldolaseWN59_01135A4IR26Positive227950 - 22861523394.7
30s ribosomal protein s21WN59_01140Q49Y18Positive228720 - 2288966940.54
serine proteaseWN59_01145P54465Positive229019 - 22971425338.5

Displaying genes 221 – 230 of 2562 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

167 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da

Displaying 1–10 of 167 metabolites

Health Effects

No health effects information available for this bacterium.