Paucilactobacillus suebicus DSM 5007 = KCTC 3549

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Lactobacillaceae

Genus

Paucilactobacillus

Description

Paucilactobacillus suebicus DSM 5007, also known as KCTC 3549, is characterized by having a single replicon. This trait is significant as it reflects the organism's genetic organization, which can influence its replication and stability. The accession number for this strain is AZGF00000000.1, which serves as a unique identifier for genomic data associated with Paucilactobacillus suebicus. The designation of Paucilactobacillus as a genus indicates its classification within the lactic acid bacteria, which are known for their role in fermentation processes and contributions to food production. This organism may exhibit features typical of lactic acid bacteria, such as the production of lactic acid as a primary fermentation product, although specific metabolic capabilities are not detailed here. Understanding the genetic structure and characteristics of Paucilactobacillus suebicus DSM 5007 can provide insights into its ecological role, particularly in fermented foods or probiotic applications. The presence of a single replicon may suggest a streamlined genome, which is often associated with efficient adaptation in specific environments, potentially enhancing its survival and metabolic activity in niche habitats. This attribute may contribute to its functionality in fermentation processes, influencing the flavor, texture, and preservation of various food products. Further research is necessary to elucidate the full range of biological and ecological implications of this strain.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusPaucilactobacillus
SpeciesPaucilactobacillus suebicus
StrainDSM 5007 = KCTC 3549

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paucilactobacillus suebicus DSM 5007 = KCTC 3549 strain DSM 5007

Gene Summary

Adenine Count

807652 bp

Thymine Count

810124 bp

Guanine Count

510987 bp

Cytosine Count

522544 bp

Genome Length

2651315 bp

Protein-coding Genes

2416 genes

Non-Coding Genes

89 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Hk97 family phage major capsid proteinFD16_GL001822Not AvailableNegative2458294 - 245952945139.3
Clpp-like proteaseFD16_GL001823Not AvailableNegative2459543 - 246026525299.7
Phage portal proteinFD16_GL001824Not AvailableNegative2460246 - 246143943177.7
hypothetical proteinFD16_GL001825Not AvailableNegative2461439 - 24616337037.12
Phage terminase-like protein large subunitFD16_GL001826Not AvailableNegative2461626 - 246352172605.0
Orf21FD16_GL001827Not AvailableNegative2463518 - 246398217765.2
Restriction endonucleaseFD16_GL001828Not AvailableNegative2464188 - 246467919392.7
hypothetical proteinFD16_GL000001B2GB45Negative521 - 125826705.8
hypothetical proteinFD16_GL000002Not AvailableNegative1361 - 210726665.6
catabolite control protein aFD16_GL000003O07329Negative2191 - 318936037.0

Displaying genes 31 – 40 of 2505 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

127 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da

Displaying 1–10 of 127 metabolites

Health Effects

No health effects information available for this bacterium.