Companilactobacillus kimchii DSM 13961 = JCM 10707

Rod

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Lactobacillaceae

Genus

Companilactobacillus

Description

Companilactobacillus kimchii DSM 13961, also known as JCM 10707, is a rod-shaped bacterium notable for its presence in the fermentation process of kimchi. This species features flagella, which are structures that facilitate motility, allowing it to navigate its environment. C. kimchii is characterized by possessing a single replicon, indicating that it has a streamlined genetic structure. The strain is cataloged under the accession AZDH00000000.1, providing a reference for researchers interested in its genomic characteristics. The rod shape and motility through flagella suggest that C. kimchii may play a significant role in the dynamic ecosystem of fermented foods, contributing to the complex interactions among microbial communities during fermentation. This bacterium's adaptation to the fermentation process of kimchi highlights its ecological significance, as it likely participates in the metabolic activities that enhance the flavor and preservation of this traditional dish. Its ability to thrive in such an environment may also reflect its capacity to contribute to the health benefits associated with fermented foods, which are often linked to enhanced gut microbiota diversity. Overall, Companilactobacillus kimchii exemplifies the intricate relationships between microbial life and food production processes.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusCompanilactobacillus
SpeciesCompanilactobacillus kimchii
StrainDSM 13961 = JCM 10707

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Companilactobacillus kimchii DSM 13961 = JCM 10707 strain DSM

Gene Summary

Adenine Count

888311 bp

Thymine Count

893472 bp

Guanine Count

481517 bp

Cytosine Count

483133 bp

Genome Length

2746576 bp

Protein-coding Genes

2508 genes

Non-Coding Genes

103 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
haloacid dehalogenase family hydrolaseFC97_GL002306Not AvailableNegative2614904 - 261541319435.8
50s ribosomal protein l20FC97_GL002307B3WF43Negative2615505 - 261586113617.0
hypothetical proteinFC97_GL002308Q1WUN0Negative2615912 - 26161097631.47
translation initiation factor if-3FC97_GL002309Q837C9Negative2616123 - 261660518029.1
3-beta hydroxysteroid dehydrogenase isomeraseFC97_GL002310Q7PCC4Negative2616921 - 261794037946.8
hypothetical proteinFC97_GL002311Not AvailablePositive2618032 - 261847217091.8
hypothetical proteinFC97_GL002312Not AvailablePositive2618554 - 261987946596.1
apa family basic amino acid polyamine antiporterFC97_GL002313Not AvailableNegative2619947 - 262133249776.2
threonine ammonia-lyaseFC97_GL002314Q2FH01Negative2621425 - 262245336836.1
alanine dehydrogenaseFC97_GL002315Q6G9C3Negative2622501 - 262362239893.1

Displaying genes 2521 – 2530 of 2611 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

126 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000433malonateC3H2O4Chemical structure of malonateNot available
Average102.0456Da
Monoisotopic101.9953086Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da

Displaying 1–10 of 126 metabolites

Health Effects

No health effects information available for this bacterium.