Loigolactobacillus bifermentans DSM 20003

Rod

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Lactobacillaceae

Genus

Loigolactobacillus

Description

Loigolactobacillus bifermentans DSM 20003 is a rod-shaped bacterium characterized by a single replicon. The organism is cataloged under the accession number AZDA00000000.1, which provides a reference for genetic and genomic studies. This species falls within the genus Loigolactobacillus, which is known for its role in the fermentation processes of various substrates, contributing to the production of lactic acid. The rod shape of L. bifermentans suggests a typical morphology for many lactic acid bacteria, which can influence their ecological roles and interactions within microbial communities. The presence of a single replicon indicates a simpler genetic organization compared to organisms with multiple replicons, which can have implications for genetic stability and replication processes. Understanding the genetic makeup of L. bifermentans is crucial for potential applications in biotechnology and fermentation industries. From a biological and ecological perspective, the characteristics of L. bifermentans, including its rod shape and genetic structure, suggest that it may play a significant role in specific fermentation environments. These traits could enable it to adapt to diverse ecological niches, contributing to the stability and functionality of microbial ecosystems, particularly in fermented food products. Overall, the study of Loigolactobacillus bifermentans DSM 20003 can provide insights into the dynamics of lactic acid bacteria in fermentation and their broader ecological implications.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusLoigolactobacillus
SpeciesLoigolactobacillus bifermentans
StrainDSM 20003

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Loigolactobacillus bifermentans DSM 20003 NODE_389, whole genome

Gene Summary

Adenine Count

868261 bp

Thymine Count

877271 bp

Guanine Count

695260 bp

Cytosine Count

692571 bp

Genome Length

3133992 bp

Protein-coding Genes

2856 genes

Non-Coding Genes

171 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bacterial abc transporter ecsb family proteinFC07_GL000931P55340Negative550590 - 55180146966.7
drug abc exporter, atp-binding subunitFC07_GL000932P55339Negative551798 - 55253527132.4
hypothetical proteinFC07_GL000933O07513Positive552653 - 55309016256.3
hypothetical proteinFC07_GL000934Not AvailablePositive553095 - 55342712252.5
peptidylprolyl isomeraseFC07_GL000935Q1WUQ1Positive553860 - 55478333998.8
amino acid transport proteinFC07_GL000936Not AvailablePositive554930 - 55563125159.1
hypothetical proteinFC07_GL000937Not AvailablePositive555658 - 55596010955.1
nadp-dependent oxidoreductase domain-containing proteinFC07_GL000938P46336Negative555997 - 55692333965.6
metal-dependent phosphohydrolaseFC07_GL000939C1KXH5Negative556946 - 55790836023.0
hypothetical proteinFC07_GL000940O08455Negative557889 - 560600102891.0

Displaying genes 651 – 660 of 3027 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

148 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000419S-formylmycothiolC18H30N2O13SChemical structure of S-formylmycothiolNot available
Average514.5Da
Monoisotopic514.146860208Da

Displaying 1–10 of 148 metabolites

Health Effects

No health effects information available for this bacterium.