Methyloprofundus sedimenti str. WF1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Methylococcales

Family

Methylococcaceae

Genus

Methyloprofundus

Description

Methyloprofundus sedimenti strain WF1 is a notable bacterium characterized by its adaptation to specific environmental conditions. It possesses a single replicon, which indicates a streamlined genomic organization that can be advantageous for survival in various niches. The strain is cataloged under the accession number LPUF00000000.1, facilitating its identification and study within microbial databases. As a member of the methylotrophic bacteria, Methyloprofundus sedimenti likely plays a significant role in carbon cycling, particularly in environments rich in methylated compounds. Its metabolism is expected to be closely linked to the degradation of methylated substrates, which can contribute to biogeochemical processes in its habitat. Understanding the characteristics of Methyloprofundus sedimenti str. WF1 can provide insights into the ecological roles of methylotrophic bacteria in sedimentary environments. The presence of a single replicon may suggest an evolutionary adaptation to efficiently utilize available resources while maintaining essential metabolic functions. Further studies on this strain could illuminate its contributions to carbon fixation and the potential for biotechnological applications, particularly in bioremediation or carbon capture strategies. Overall, Methyloprofundus sedimenti str. WF1 exemplifies the intricate balance of microbial life and its importance in ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderMethylococcales
FamilyMethylococcaceae
GenusMethyloprofundus
SpeciesMethyloprofundus sedimenti
StrainWF1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Methyloprofundus sedimenti strain WF1 Contig006, whole genome

Gene Summary

Adenine Count

1264773 bp

Thymine Count

1265580 bp

Guanine Count

887167 bp

Cytosine Count

873006 bp

Genome Length

4290526 bp

Protein-coding Genes

3702 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
biotin--acetyl-coa-carboxylase ligaseAU255_10650Not AvailableNegative2431836 - 243283136406.6
peptidase s49AU255_10655Not AvailableNegative2432863 - 243380134035.9
23s rrna pseudouridylate synthaseAU255_10660Not AvailableNegative2434020 - 243497335997.0
translation initiation factor if-1AU255_10670Not AvailablePositive2438025 - 24382438407.42
atp-dependent clp protease atp-binding subunit clpaAU255_10675Not AvailableNegative2438272 - 244053383422.2
atp-dependent clp protease adaptor clpsAU255_10680Not AvailableNegative2440555 - 244087811939.3
nudix hydrolaseAU255_10685Not AvailablePositive2441014 - 244146917338.8
pp_02069AU255_10690Not AvailablePositive2441469 - 2442560Not Available
hypothetical proteinAU255_10695Not AvailablePositive2442648 - 244312419194.7
hypothetical proteinAU255_10700Not AvailablePositive2443227 - 244422238192.6

Displaying genes 2071 – 2080 of 3756 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.