Pacificitalea manganoxidans str. DY25

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Pacificitalea

Description

Pacificitalea manganoxidans str. DY25 is a notable bacterium characterized by its possession of three replicons, which are typically indicative of its genomic complexity and adaptability. This organism is cataloged under the accession numbers NZ_CP021407.1, NZ_CP021408.1, and NZ_CP021411.1, which correspond to its complete genomic sequences. The presence of multiple replicons may provide insights into the organism's evolutionary strategies, such as horizontal gene transfer or enhanced metabolic capabilities. In terms of ecological significance, Pacificitalea manganoxidans str. DY25 is known for its role in manganese oxidation, which is an important biogeochemical process. This capability may contribute to manganese cycling in various environments, potentially influencing both microbial community dynamics and nutrient availability. The specific metabolic pathways that enable manganese oxidation could also have implications for bioremediation strategies, particularly in environments contaminated with manganese or other metal ions. Overall, Pacificitalea manganoxidans str. DY25 exemplifies the complexity and versatility of microbial life, as illustrated by its genomic structure and ecological functions. Its ability to participate in essential biogeochemical cycles underscores the importance of studying microbial diversity and its potential applications in environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusPacificitalea
SpeciesPacificitalea manganoxidans
StrainDY25

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pacificitalea manganoxidans strain DY25 plasmid pDY25-D, complete

Gene Summary

Adenine Count

9304 bp

Thymine Count

8987 bp

Guanine Count

18415 bp

Cytosine Count

18574 bp

Genome Length

55280 bp

Protein-coding Genes

38 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mobq family relaxaseCBW24_RS18185Not AvailablePositive3110 - 439648622.5
hypothetical proteinCBW24_RS18190Not AvailableNegative4386 - 472412376.9
ardc family proteinCBW24_RS18195Not AvailablePositive5214 - 609833007.8
shedu immune nuclease family proteinCBW24_RS18200Not AvailableNegative6322 - 747044273.2
hepn domain-containing proteinCBW24_RS18205Not AvailablePositive7544 - 823625280.2
recombinase family proteinCBW24_RS18210Not AvailablePositive8372 - 890819884.1
dead/deah box helicaseCBW24_RS18215Not AvailableNegative8937 - 1126486783.4
site-specific dna-methyltransferaseCBW24_RS18220Not AvailableNegative11264 - 1327675720.9
helix-turn-helix domain-containing proteinCBW24_RS18225Not AvailableNegative13513 - 1380310220.3
type ii toxin-antitoxin system rele/pare family toxinCBW24_RS18230Not AvailableNegative13800 - 1414112578.2

Displaying genes 41 – 50 of 155 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.