Shinella sp. DD12

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Shinella

Description

Shinella sp. DD12 is a bacterium characterized by a single replicon, indicating it possesses a streamlined genetic organization. It is cataloged under the accession number AYLZ00000000.2, which serves as a reference for researchers in genomic studies and microbial taxonomy. The genus Shinella is known for its environmental significance, particularly in the degradation of organic materials. While specific metabolic capabilities of Shinella sp. DD12 are not provided, members of this genus typically exhibit versatile metabolic pathways that enable them to thrive in diverse ecological niches. This adaptability may suggest potential roles in bioremediation processes, where such bacteria can contribute to the breakdown of complex organic pollutants in various environments. In summary, Shinella sp. DD12, with its single replicon and established genomic reference, represents a unique member of the Shinella genus that may play a significant role in environmental microbiology. Its characteristics highlight the potential for further exploration of its ecological functions, particularly in the context of organic matter degradation and bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusShinella
SpeciesShinella sp. DD12
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shinella sp. DD12 SHLA_154c, whole genome shotgun sequence.

Gene Summary

Adenine Count

1407629 bp

Thymine Count

1405590 bp

Guanine Count

2434616 bp

Cytosine Count

2435418 bp

Genome Length

7683253 bp

Protein-coding Genes

7209 genes

Non-Coding Genes

194 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribonucleoside-diphosphate reductase, class 1b, beta subunitSHLA_2c001540Not AvailablePositive160905 - 16189437558.4
octopine catabolism/uptake operon regulatory protein occrSHLA_2c001550Not AvailableNegative161958 - 16286333012.3
amine acid abc transporter, permease protein his/glu/gln/arg/opine familySHLA_2c001560Not AvailablePositive162996 - 16371225098.1
amine acid abc transporter, permease protein his/glu/gln/arg/opine familySHLA_2c001570Not AvailablePositive163709 - 16442826227.9
abc-type histidine transport system atpase componentSHLA_2c001580Not AvailablePositive164425 - 16520728912.9
octopine-binding periplasmic protein occtSHLA_2c001590Not AvailablePositive165235 - 16605929190.0
opine oxidase subunit bSHLA_2c001600Not AvailablePositive166214 - 16733539409.2
sarcosine oxidase subunit alphaSHLA_2c001610Not AvailablePositive167319 - 16762110835.2
opine oxidase subunit aSHLA_2c001620Not AvailablePositive167618 - 16908451292.1
putative translation initiation inhibitor, yjgf familySHLA_2c001630Not AvailablePositive169104 - 16944812587.2

Displaying genes 401 – 410 of 7403 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.