Shinella sp. DD12

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Shinella

Description

Shinella sp. DD12 is a bacterium characterized by a single replicon, indicating it possesses a streamlined genetic organization. It is cataloged under the accession number AYLZ00000000.2, which serves as a reference for researchers in genomic studies and microbial taxonomy. The genus Shinella is known for its environmental significance, particularly in the degradation of organic materials. While specific metabolic capabilities of Shinella sp. DD12 are not provided, members of this genus typically exhibit versatile metabolic pathways that enable them to thrive in diverse ecological niches. This adaptability may suggest potential roles in bioremediation processes, where such bacteria can contribute to the breakdown of complex organic pollutants in various environments. In summary, Shinella sp. DD12, with its single replicon and established genomic reference, represents a unique member of the Shinella genus that may play a significant role in environmental microbiology. Its characteristics highlight the potential for further exploration of its ecological functions, particularly in the context of organic matter degradation and bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusShinella
SpeciesShinella sp. DD12
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shinella sp. DD12 SHLA_154c, whole genome shotgun sequence.

Gene Summary

Adenine Count

1407629 bp

Thymine Count

1405590 bp

Guanine Count

2434616 bp

Cytosine Count

2435418 bp

Genome Length

7683253 bp

Protein-coding Genes

7209 genes

Non-Coding Genes

194 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
formate dehydrogenase-o major subunitSHLA_2c001140Not AvailableNegative120353 - 12095221299.2
selenide, water dikinase seldSHLA_2c001150Not AvailablePositive121124 - 12217935587.0
pas/pac sensor-containing diguanylate cyclase/phosphodiesteraseSHLA_2c001160Not AvailableNegative122332 - 12462084045.7
crp/fnr family transcriptional regulatorSHLA_2c001170Not AvailablePositive124764 - 12544424917.0
chemoreceptor mcpaSHLA_2c001180Not AvailableNegative125498 - 12699452725.7
hypothetical proteinSHLA_2c001190Not AvailableNegative127070 - 1272255634.87
sugar kinase, ribokinase familySHLA_2c001200Not AvailablePositive127412 - 12859041390.9
hypothetical proteinSHLA_2c001210Not AvailablePositive128631 - 12940428022.5
ribose import atp-binding protein rbsa 2SHLA_2c001220Not AvailablePositive129426 - 13019927726.5
autoinducer 2-binding protein lsrbSHLA_2c001230Not AvailablePositive130231 - 13121734027.5

Displaying genes 361 – 370 of 7403 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.