Shinella sp. DD12

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Shinella

Description

Shinella sp. DD12 is a bacterium characterized by a single replicon, indicating it possesses a streamlined genetic organization. It is cataloged under the accession number AYLZ00000000.2, which serves as a reference for researchers in genomic studies and microbial taxonomy. The genus Shinella is known for its environmental significance, particularly in the degradation of organic materials. While specific metabolic capabilities of Shinella sp. DD12 are not provided, members of this genus typically exhibit versatile metabolic pathways that enable them to thrive in diverse ecological niches. This adaptability may suggest potential roles in bioremediation processes, where such bacteria can contribute to the breakdown of complex organic pollutants in various environments. In summary, Shinella sp. DD12, with its single replicon and established genomic reference, represents a unique member of the Shinella genus that may play a significant role in environmental microbiology. Its characteristics highlight the potential for further exploration of its ecological functions, particularly in the context of organic matter degradation and bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusShinella
SpeciesShinella sp. DD12
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shinella sp. DD12 SHLA_154c, whole genome shotgun sequence.

Gene Summary

Adenine Count

1407629 bp

Thymine Count

1405590 bp

Guanine Count

2434616 bp

Cytosine Count

2435418 bp

Genome Length

7683253 bp

Protein-coding Genes

7209 genes

Non-Coding Genes

194 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative aldehyde dehydrogenase dhasSHLA_2c000540Not AvailableNegative57939 - 5943852888.4
antibiotic biosynthesis monooxygenaseSHLA_2c000550Not AvailableNegative59464 - 5976310961.1
high-affinity branched-chain amino acid transport atp-binding protein livfSHLA_2c000560Not AvailableNegative59794 - 6050725261.1
high-affinity branched-chain amino acid transport atp-binding protein brafSHLA_2c000570Not AvailableNegative60497 - 6121926480.1
abc-type branched-chain amino acid transport system permease componentSHLA_2c000580Not AvailableNegative61216 - 6225336174.5
branched-chain amino acid abc-type transport system permease componentSHLA_2c000590Not AvailableNegative62250 - 6311629861.8
abc-type branched-chain amino acid transport system periplasmic componentSHLA_2c000600Not AvailableNegative63182 - 6439943905.8
abc-type branched-chain amino acid transport system periplasmic componentSHLA_2c000610Not AvailableNegative64706 - 6577638680.9
regulatory protein marrSHLA_2c000620Not AvailablePositive66056 - 6647215638.0
nicotinamidase-like amidaseSHLA_2c000630Not AvailableNegative66563 - 6725225457.2

Displaying genes 301 – 310 of 7403 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.