Serratia sp. DD3

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Serratia

Description

Serratia sp. DD3 is a Gram-negative bacterium characterized by its rod shape and the presence of flagella, which facilitate motility. This species is notable for having a single replicon, indicating a streamlined genetic organization. The genetic information for Serratia sp. DD3 is catalogued under the accession number AYKS00000000.2, providing a reference for researchers interested in its genomic and functional characteristics. The flagella enable Serratia sp. DD3 to navigate its environment, which is critical for its survival and potential ecological roles. As a Gram-negative organism, it possesses an outer membrane that may confer advantages in certain ecological niches, such as resistance to specific antimicrobial agents. Understanding Serratia sp. DD3's traits contributes to insights into its ecological interactions, particularly in environments where motility is essential for accessing nutrients or escaping predators. The bacterium's ability to thrive in diverse habitats can be significant for ecological studies, especially in microbial community dynamics and interactions with other microorganisms.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusSerratia
SpeciesSerratia sp. DD3
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Serratia sp. DD3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Serratia sp. DD3 SRDD_contig000123, whole genome shotgun sequence.

Gene Summary

Adenine Count

1351038 bp

Thymine Count

1329888 bp

Guanine Count

1285962 bp

Cytosine Count

1306644 bp

Genome Length

5273532 bp

Protein-coding Genes

4523 genes

Non-Coding Genes

157 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphogluconate dehydrataseSRDD_02040Not AvailableNegative254863 - 25667164194.2
thermoresistant gluconokinaseSRDD_02050Not AvailableNegative256682 - 25720319175.1
low-affinity gluconate transporterSRDD_02060Not AvailablePositive257576 - 25894347221.8
arabinose operon regulatory proteinSRDD_02070Not AvailableNegative259023 - 25993434545.8
ribose transport system permease protein rbscSRDD_02080Not AvailableNegative260123 - 26112434905.1
arabinose import atp-binding protein aragSRDD_02090Not AvailableNegative261164 - 26266355208.3
l-arabinose-binding periplasmic proteinSRDD_02100Not AvailableNegative262896 - 26387935396.9
ribulokinaseSRDD_02110Not AvailablePositive264242 - 26593361018.5
l-ribulose-5-phosphate 4-epimerase ulafSRDD_02120Not AvailablePositive265930 - 26662825798.7
l-arabinose isomeraseSRDD_02130Not AvailablePositive266644 - 26814355508.2

Displaying genes 301 – 310 of 4680 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.