Halobacterium hubeiense str. JI20-1

Gram-negativeRod

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Halobacteriaceae

Genus

Halobacterium

Description

Halobacterium hubeiense str. JI20-1 is a Gram-negative, rod-shaped archaeon notable for possessing flagella, which facilitate motility. This organism has a complex genomic structure, characterized by the presence of four replicons, indicating a potentially intricate regulatory and replication system. The genomic information of Halobacterium hubeiense str. JI20-1 is cataloged under multiple accession numbers: NZ_LN831303.1, NZ_LN831304.1, NZ_LN831302.1, and NZ_LN831305.1, which provide a comprehensive overview of its genetic makeup. The presence of flagella suggests that Halobacterium hubeiense str. JI20-1 is capable of active movement in its environment, which is a significant adaptation for survival in various ecological niches. The rod shape of this organism may also contribute to its ability to thrive in specific habitats, potentially influencing its nutrient uptake and interaction with surrounding microorganisms. Understanding the traits of Halobacterium hubeiense str. JI20-1 can provide insights into the ecological roles of halophilic archaea, particularly in extreme environments, where they may play crucial roles in nutrient cycling and contribute to the overall biodiversity of microbial communities. The study of such organisms enhances our comprehension of microbial life in extreme conditions and their adaptations to harsh environments.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHalobacteriaceae
GenusHalobacterium
SpeciesHalobacterium hubeiense
StrainJI20-1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Halobacterium hubeiense str. JI20-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halobacterium hubeiense strain JI20-1 plasmid pSTJ001, complete

Gene Summary

Adenine Count

69594 bp

Thymine Count

70379 bp

Guanine Count

104297 bp

Cytosine Count

105252 bp

Genome Length

349522 bp

Protein-coding Genes

333 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinHHUB_RS13595Not AvailableNegative85534 - 857497179.69
pqq-binding-like beta-propeller repeat proteinHHUB_RS13600Not AvailablePositive86095 - 8748949305.4
hypothetical proteinHHUB_RS13605Not AvailableNegative87508 - 8800216920.2
hypothetical proteinHHUB_RS13610Not AvailablePositive88111 - 8876123835.4
trmb family transcriptional regulatorHHUB_RS13615Not AvailablePositive89051 - 8985129463.8
halod1 output domain-containing proteinHHUB_RS13620Not AvailableNegative89884 - 9018010293.0
hypothetical proteinHHUB_RS13625Not AvailablePositive90486 - 9127428317.3
duf2171 domain-containing proteinHHUB_RS13630Not AvailableNegative91271 - 915078499.7
hypothetical proteinHHUB_RS13635Not AvailablePositive91692 - 918776532.28
hypothetical proteinHHUB_RS16710Not AvailableNegative91983 - 921445652.68

Displaying genes 81 – 90 of 3360 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

19 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002759dTDP-beta-L-rhamnoseC16H24N2O15P2Not availableNot available
Average546.316Da
Monoisotopic546.066289237Da
BASm00031102-dehydro-3-deoxy-D-galactonateC6H10O6Chemical structure of 2-dehydro-3-deoxy-D-galactonateNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm00033532-dehydro-3-deoxy-6-phospho-D-galactonateC6H8O9PChemical structure of 2-dehydro-3-deoxy-6-phospho-D-galactonate32120-43-7
Average255.0961Da
Monoisotopic254.9905934Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034237-phospho-2-dehydro-3-deoxy-D-arabino-heptonateC7H10O10PChemical structure of 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonateNot available
Average285.122Da
Monoisotopic285.0028043Da
BASm0003432di-trans,octa-cis-undecaprenyl diphosphateC55H89O7P2Chemical structure of di-trans,octa-cis-undecaprenyl diphosphateNot available
Average924.259Da
Monoisotopic923.609999942Da
BASm00037914-deoxy-4-formamido-alpha-L-arabinopyranosyl di-trans,octa-cis-undecaprenyl phosphateC61H99NO8PChemical structure of 4-deoxy-4-formamido-alpha-L-arabinopyranosyl di-trans,octa-cis-undecaprenyl phosphateNot available
Average1005.436Da
Monoisotopic1004.71137973Da

Displaying 1–10 of 19 metabolites

Health Effects

No health effects information available for this bacterium.