Pseudomonas oryzae

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas oryzae is a bacterial species characterized by a single replicon, which indicates its genetic material is organized in one circular chromosome. The genomic sequence of Pseudomonas oryzae is represented by the accession number NZ_LT629751.1. This organism falls within the Pseudomonas genus, known for its metabolic versatility and ecological adaptability. While specific traits and ecological roles of Pseudomonas oryzae are not provided, members of the Pseudomonas genus are generally recognized for their importance in various environments, including soil and water ecosystems. They can play roles in biogeochemical cycles, contribute to nutrient cycling, and engage in interactions with plants and other microorganisms. The presence of Pseudomonas species in agricultural settings is particularly noteworthy, as they can be involved in promoting plant growth or acting as biocontrol agents against plant pathogens. This suggests that Pseudomonas oryzae may also have potential applications in agriculture, although specific applications for this species were not detailed. Understanding the traits of Pseudomonas oryzae, including its genomic organization, is crucial for further research into its ecological roles and potential uses in sustainable practices. The knowledge of its genetic structure can lead to insights into its adaptability and functional capabilities in various environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas oryzae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas oryzae
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas oryzae strain KCTC 32247 chromosome I.

Gene Summary

Adenine Count

761029 bp

Thymine Count

754536 bp

Guanine Count

1564956 bp

Cytosine Count

1561572 bp

Genome Length

4642193 bp

Protein-coding Genes

4189 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinBLT78_RS03500Not AvailableNegative755903 - 75745056078.1
atp-dependent helicase hrpbBLT78_RS03505Not AvailableNegative757870 - 7581399712.5
type vi secretion proteinBLT78_RS03510Not AvailableNegative758163 - 7582974848.85
pone immunity protein domain-containing proteinBLT78_RS03515Not AvailableNegative758342 - 75930736592.1
hypothetical proteinBLT78_RS03520Not AvailableNegative759304 - 76078853868.3
type vi secretion system tip protein vgrgBLT78_RS03525Not AvailableNegative760785 - 76307985689.0
sigma-54 interaction domain-containing proteinBLT78_RS03530Not AvailableNegative763097 - 76461756178.5
type vi secretion system atpase tsshBLT78_RS03535Not AvailableNegative764628 - 76721393700.7
type vi secretion system baseplate subunit tssgBLT78_RS03540Not AvailableNegative767210 - 76823238772.5
type vi secretion system baseplate subunit tssfBLT78_RS03545Not AvailableNegative768196 - 76998667758.4

Displaying genes 711 – 720 of 4291 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.