Pseudomonas oryzae

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas oryzae is a bacterial species characterized by a single replicon, which indicates its genetic material is organized in one circular chromosome. The genomic sequence of Pseudomonas oryzae is represented by the accession number NZ_LT629751.1. This organism falls within the Pseudomonas genus, known for its metabolic versatility and ecological adaptability. While specific traits and ecological roles of Pseudomonas oryzae are not provided, members of the Pseudomonas genus are generally recognized for their importance in various environments, including soil and water ecosystems. They can play roles in biogeochemical cycles, contribute to nutrient cycling, and engage in interactions with plants and other microorganisms. The presence of Pseudomonas species in agricultural settings is particularly noteworthy, as they can be involved in promoting plant growth or acting as biocontrol agents against plant pathogens. This suggests that Pseudomonas oryzae may also have potential applications in agriculture, although specific applications for this species were not detailed. Understanding the traits of Pseudomonas oryzae, including its genomic organization, is crucial for further research into its ecological roles and potential uses in sustainable practices. The knowledge of its genetic structure can lead to insights into its adaptability and functional capabilities in various environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas oryzae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas oryzae
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas oryzae strain KCTC 32247 chromosome I.

Gene Summary

Adenine Count

761029 bp

Thymine Count

754536 bp

Guanine Count

1564956 bp

Cytosine Count

1561572 bp

Genome Length

4642193 bp

Protein-coding Genes

4189 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
serine o-acetyltransferaseBLT78_RS00205Not AvailablePositive39781 - 4059028964.9
fe-s cluster assembly transcriptional regulator iscrBLT78_RS00210Not AvailablePositive40741 - 4124118017.4
iscs subfamily cysteine desulfuraseBLT78_RS00215Not AvailablePositive41275 - 4248944511.0
fe-s cluster assembly scaffold iscuBLT78_RS00220Not AvailablePositive42518 - 4290413802.5
iron-sulfur cluster assembly protein iscaBLT78_RS00225Not AvailablePositive42930 - 4325311718.8
co-chaperone hscbBLT78_RS00230Not AvailablePositive43262 - 4378020047.8
fe-s protein assembly chaperone hscaBLT78_RS00235Not AvailablePositive43823 - 4568265522.6
isc system 2fe-2s type ferredoxinBLT78_RS00240Not AvailablePositive45686 - 4602412367.5
fe-s cluster assembly protein iscxBLT78_RS00245Not AvailablePositive46040 - 462407526.88
nucleoside-diphosphate kinaseBLT78_RS00250Not AvailablePositive46470 - 4690115513.5

Displaying genes 41 – 50 of 4291 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.