Pseudomonas oryzae

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas oryzae is a bacterial species characterized by a single replicon, which indicates its genetic material is organized in one circular chromosome. The genomic sequence of Pseudomonas oryzae is represented by the accession number NZ_LT629751.1. This organism falls within the Pseudomonas genus, known for its metabolic versatility and ecological adaptability. While specific traits and ecological roles of Pseudomonas oryzae are not provided, members of the Pseudomonas genus are generally recognized for their importance in various environments, including soil and water ecosystems. They can play roles in biogeochemical cycles, contribute to nutrient cycling, and engage in interactions with plants and other microorganisms. The presence of Pseudomonas species in agricultural settings is particularly noteworthy, as they can be involved in promoting plant growth or acting as biocontrol agents against plant pathogens. This suggests that Pseudomonas oryzae may also have potential applications in agriculture, although specific applications for this species were not detailed. Understanding the traits of Pseudomonas oryzae, including its genomic organization, is crucial for further research into its ecological roles and potential uses in sustainable practices. The knowledge of its genetic structure can lead to insights into its adaptability and functional capabilities in various environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas oryzae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas oryzae
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas oryzae strain KCTC 32247 chromosome I.

Gene Summary

Adenine Count

761029 bp

Thymine Count

754536 bp

Guanine Count

1564956 bp

Cytosine Count

1561572 bp

Genome Length

4642193 bp

Protein-coding Genes

4189 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
winged helix-turn-helix domain-containing proteinBLT78_RS00105Not AvailableNegative16871 - 1716710909.0
sodium:proton antiporter nhadBLT78_RS00110Not AvailableNegative17183 - 1853848481.4
valine--trna ligaseBLT78_RS00115Not AvailableNegative18704 - 21535106408.0
hypothetical proteinBLT78_RS00120Not AvailableNegative21713 - 2212014819.0
dna polymerase iii subunit chiBLT78_RS00125Not AvailableNegative22136 - 2255515649.5
leucyl aminopeptidaseBLT78_RS00130Not AvailableNegative22596 - 2408352624.1
lps export abc transporter permease lptfBLT78_RS00135Not AvailablePositive24229 - 2535641773.0
lps export abc transporter permease lptgBLT78_RS00140Not AvailablePositive25343 - 2640438665.6
hypothetical proteinBLT78_RS00145Not AvailableNegative26452 - 2785852003.0
rdd family proteinBLT78_RS00150Not AvailableNegative27941 - 2843518685.1

Displaying genes 21 – 30 of 4291 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.