Pseudomonas oryzae

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas oryzae is a bacterial species characterized by a single replicon, which indicates its genetic material is organized in one circular chromosome. The genomic sequence of Pseudomonas oryzae is represented by the accession number NZ_LT629751.1. This organism falls within the Pseudomonas genus, known for its metabolic versatility and ecological adaptability. While specific traits and ecological roles of Pseudomonas oryzae are not provided, members of the Pseudomonas genus are generally recognized for their importance in various environments, including soil and water ecosystems. They can play roles in biogeochemical cycles, contribute to nutrient cycling, and engage in interactions with plants and other microorganisms. The presence of Pseudomonas species in agricultural settings is particularly noteworthy, as they can be involved in promoting plant growth or acting as biocontrol agents against plant pathogens. This suggests that Pseudomonas oryzae may also have potential applications in agriculture, although specific applications for this species were not detailed. Understanding the traits of Pseudomonas oryzae, including its genomic organization, is crucial for further research into its ecological roles and potential uses in sustainable practices. The knowledge of its genetic structure can lead to insights into its adaptability and functional capabilities in various environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas oryzae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas oryzae
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas oryzae strain KCTC 32247 chromosome I.

Gene Summary

Adenine Count

761029 bp

Thymine Count

754536 bp

Guanine Count

1564956 bp

Cytosine Count

1561572 bp

Genome Length

4642193 bp

Protein-coding Genes

4189 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
paqr family membrane homeostasis protein trhaBLT78_RS01250Not AvailableNegative254535 - 25515222321.9
cold-shock proteinBLT78_RS01255Not AvailablePositive255731 - 2559437661.98
llm class flavin-dependent oxidoreductaseBLT78_RS01260Not AvailableNegative256124 - 25712235698.1
fad-dependent monooxygenaseBLT78_RS01265Not AvailableNegative257392 - 25931470430.9
type vii toxin-antitoxin system hept family rnase toxinBLT78_RS01270Not AvailableNegative259641 - 26006015565.8
type vii toxin-antitoxin system mnta family adenylyltransferase antitoxinBLT78_RS01275Not AvailableNegative260050 - 26044514032.8
helix-turn-helix domain-containing proteinBLT78_RS01280Not AvailableNegative260449 - 26104822285.8
type iii glutamate--ammonia ligaseBLT78_RS01285Not AvailablePositive261304 - 26263849097.5
class ii glutamine amidotransferaseBLT78_RS01290Not AvailablePositive262696 - 26359832517.0
protein glxcBLT78_RS01295Not AvailablePositive263610 - 26429324003.6

Displaying genes 251 – 260 of 4291 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.