Ochrobactrum sp. EGD-AQ16

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Brucellaceae

Genus

Ochrobactrum

Description

Ochrobactrum sp. EGD-AQ16 is characterized by having a single replicon, indicating a streamlined genomic structure that may influence its adaptability and metabolic capabilities. This bacterium is cataloged under the accession number AWEU00000000.1, which provides a reference for genetic and genomic studies. The genus Ochrobactrum includes various species known for their environmental versatility, often found in soil and water, and sometimes associated with clinical settings. Although specific phenotypic characteristics of Ochrobactrum sp. EGD-AQ16 are not detailed, members of this genus typically exhibit traits that allow them to thrive in diverse habitats. The presence of a single replicon in Ochrobactrum sp. EGD-AQ16 might suggest certain ecological advantages. For instance, a simpler genomic architecture can facilitate quicker responses to environmental changes, potentially enhancing survival in fluctuating conditions. This adaptability may play a significant role in the organism's ability to colonize different environments, which is a hallmark of many Ochrobactrum species. In conclusion, while specific functional traits and ecological roles of Ochrobactrum sp. EGD-AQ16 are not detailed, its genomic configuration with a single replicon suggests potential adaptability and ecological versatility, traits that are significant in understanding its role in microbial communities and environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyBrucellaceae
GenusOchrobactrum
SpeciesOchrobactrum sp. EGD-AQ16
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ochrobactrum sp. EGD-AQ16 contig9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1035057 bp

Thymine Count

1019136 bp

Guanine Count

1370781 bp

Cytosine Count

1414748 bp

Genome Length

4839722 bp

Protein-coding Genes

4715 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter atp-binding proteinO206_20820Not AvailableNegative1534608 - 153574440745.0
2-deoxy-d-gluconate 3-dehydrogenaseO206_20825Not AvailableNegative1535839 - 153661226487.5
dioxygenaseO206_20830Not AvailablePositive1536947 - 153758523506.1
sugar isomeraseO206_20835Not AvailableNegative1537688 - 153898047766.1
short-chain dehydrogenaseO206_20840Not AvailableNegative1539053 - 154114975750.0
deor faimly transcriptional regulatorO206_20845Not AvailablePositive1541376 - 154220030183.4
abc transporter substrate-binding proteinO206_20850Not AvailablePositive1542275 - 154328234967.9
sugar abc transporterO206_20855Not AvailablePositive1543324 - 154496459344.8
branched-chain amino acid abc transporter permeaseO206_20860Not AvailablePositive1544968 - 154596634770.8
branched-chain amino acid abc transporter permeaseO206_20865Not AvailablePositive1545963 - 154696135104.9

Displaying genes 1581 – 1590 of 4793 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.