Hymenobacter sp. DG25B

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter sp. DG25B is a Gram-negative, rod-shaped bacterium notable for its genomic structure, which contains four replicons. This trait may suggest a complex genomic architecture that could play a role in its adaptability and metabolic diversity. The presence of multiple replicons is often associated with enhanced genetic flexibility, potentially allowing the organism to thrive in various environments or respond effectively to ecological changes. The genomic data for Hymenobacter sp. DG25B is accessible through several GenBank accession numbers: NZ_CP010055.1, NZ_CP010056.1, NZ_CP010057.1, and NZ_CP010054.1. These accessions provide researchers with the necessary genetic information to explore the bacterium's characteristics further, including its metabolic pathways, potential biotechnological applications, and ecological roles. Biologically, Hymenobacter species are typically found in diverse environments, including soil and water, where they may contribute to nutrient cycling and organic matter decomposition. The traits of Hymenobacter sp. DG25B could indicate its ecological importance in such habitats, as its Gram-negative nature and rod shape may confer advantages in colonization and interaction with other microorganisms. Understanding the specific ecological roles of this bacterium can provide insights into the dynamics of microbial communities and their contributions to environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter sp. DG25B
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter sp. DG25B chromosome, complete genome.

Gene Summary

Adenine Count

825140 bp

Thymine Count

827985 bp

Guanine Count

1115071 bp

Cytosine Count

1106450 bp

Genome Length

3874646 bp

Protein-coding Genes

3325 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
t9ss type a sorting domain-containing proteinPK28_RS04390Not AvailablePositive1015048 - 101737584004.2
dna repair protein recoPK28_RS04395Not AvailablePositive1017480 - 101819926806.3
fkbp-type peptidyl-prolyl cis-trans isomerasePK28_RS04400Not AvailableNegative1018315 - 101872814964.2
fkbp-type peptidyl-prolyl cis-trans isomerasePK28_RS18835Not AvailableNegative1018780 - 101934920029.0
fkbp-type peptidyl-prolyl cis-trans isomerasePK28_RS04410Not AvailableNegative1019437 - 102043235940.4
bifunctional oligoribonuclease/pap phosphatase nrnaPK28_RS04415Not AvailableNegative1020471 - 102151438637.1
nucleoside-diphosphate kinasePK28_RS04420Not AvailablePositive1021873 - 102229215234.0
nucleoside permeasePK28_RS04425Not AvailableNegative1022547 - 102389049653.6
alkene reductasePK28_RS04430Not AvailableNegative1024123 - 102523539620.8
arsr/smtb family transcription factorPK28_RS04435Not AvailableNegative1025330 - 10255999465.61

Displaying genes 891 – 900 of 3808 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.