Hymenobacter sp. DG25B

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter sp. DG25B is a Gram-negative, rod-shaped bacterium notable for its genomic structure, which contains four replicons. This trait may suggest a complex genomic architecture that could play a role in its adaptability and metabolic diversity. The presence of multiple replicons is often associated with enhanced genetic flexibility, potentially allowing the organism to thrive in various environments or respond effectively to ecological changes. The genomic data for Hymenobacter sp. DG25B is accessible through several GenBank accession numbers: NZ_CP010055.1, NZ_CP010056.1, NZ_CP010057.1, and NZ_CP010054.1. These accessions provide researchers with the necessary genetic information to explore the bacterium's characteristics further, including its metabolic pathways, potential biotechnological applications, and ecological roles. Biologically, Hymenobacter species are typically found in diverse environments, including soil and water, where they may contribute to nutrient cycling and organic matter decomposition. The traits of Hymenobacter sp. DG25B could indicate its ecological importance in such habitats, as its Gram-negative nature and rod shape may confer advantages in colonization and interaction with other microorganisms. Understanding the specific ecological roles of this bacterium can provide insights into the dynamics of microbial communities and their contributions to environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter sp. DG25B
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter sp. DG25B chromosome, complete genome.

Gene Summary

Adenine Count

825140 bp

Thymine Count

827985 bp

Guanine Count

1115071 bp

Cytosine Count

1106450 bp

Genome Length

3874646 bp

Protein-coding Genes

3325 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pasta domain-containing proteinPK28_RS07380Not AvailableNegative1720190 - 172097528202.2
d-alanine--d-alanine ligasePK28_RS07385Not AvailableNegative1721189 - 1723960103686.0
porin family proteinPK28_RS07390Not AvailableNegative1724021 - 172462322298.7
phosphoglycerate kinasePK28_RS07395Not AvailablePositive1724826 - 172602242946.4
hypothetical proteinPK28_RS07400Not AvailableNegative1726186 - 172682124823.4
site-2 protease family proteinPK28_RS07405Not AvailableNegative1726862 - 172809446520.3
had family phosphatasePK28_RS07410Not AvailableNegative1728057 - 172872224919.7
Trna-metNot AvailableNot AvailablePositive1728874 - 1728950Not Available
efflux transporter outer membrane subunitPK28_RS07420Not AvailableNegative1729382 - 173085153231.1
efflux rnd transporter permease subunitPK28_RS07425Not AvailableNegative1730861 - 1734040115330.0

Displaying genes 1501 – 1510 of 3808 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.