Hymenobacter sp. DG25B

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter sp. DG25B is a Gram-negative, rod-shaped bacterium notable for its genomic structure, which contains four replicons. This trait may suggest a complex genomic architecture that could play a role in its adaptability and metabolic diversity. The presence of multiple replicons is often associated with enhanced genetic flexibility, potentially allowing the organism to thrive in various environments or respond effectively to ecological changes. The genomic data for Hymenobacter sp. DG25B is accessible through several GenBank accession numbers: NZ_CP010055.1, NZ_CP010056.1, NZ_CP010057.1, and NZ_CP010054.1. These accessions provide researchers with the necessary genetic information to explore the bacterium's characteristics further, including its metabolic pathways, potential biotechnological applications, and ecological roles. Biologically, Hymenobacter species are typically found in diverse environments, including soil and water, where they may contribute to nutrient cycling and organic matter decomposition. The traits of Hymenobacter sp. DG25B could indicate its ecological importance in such habitats, as its Gram-negative nature and rod shape may confer advantages in colonization and interaction with other microorganisms. Understanding the specific ecological roles of this bacterium can provide insights into the dynamics of microbial communities and their contributions to environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter sp. DG25B
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter sp. DG25B chromosome, complete genome.

Gene Summary

Adenine Count

825140 bp

Thymine Count

827985 bp

Guanine Count

1115071 bp

Cytosine Count

1106450 bp

Genome Length

3874646 bp

Protein-coding Genes

3325 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phytanoyl-coa dioxygenase family proteinPK28_RS00625Not AvailableNegative134323 - 13513230038.5
30s ribosomal protein s12 methylthiotransferase rimoPK28_RS00630Not AvailableNegative135299 - 13661550224.9
signal recognition particle-docking protein ftsyPK28_RS00635Not AvailableNegative136867 - 13784435283.7
duf4295 domain-containing proteinPK28_RS19790Not AvailableNegative138031 - 1381925841.19
50s ribosomal protein l33PK28_RS00640Not AvailableNegative138200 - 1383826968.59
duf5602 domain-containing proteinPK28_RS00645Not AvailableNegative138597 - 13942130366.0
aminopeptidase p family proteinPK28_RS00650Not AvailableNegative139678 - 14132460741.4
50s ribosomal protein l28PK28_RS00655Not AvailableNegative141426 - 1416659117.18
duf5522 domain-containing proteinPK28_RS00660Not AvailableNegative141763 - 1419516702.93
rida family proteinPK28_RS00665Not AvailableNegative141952 - 14233813859.6

Displaying genes 131 – 140 of 3808 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.