Hymenobacter sp. DG25B

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter sp. DG25B is a Gram-negative, rod-shaped bacterium notable for its genomic structure, which contains four replicons. This trait may suggest a complex genomic architecture that could play a role in its adaptability and metabolic diversity. The presence of multiple replicons is often associated with enhanced genetic flexibility, potentially allowing the organism to thrive in various environments or respond effectively to ecological changes. The genomic data for Hymenobacter sp. DG25B is accessible through several GenBank accession numbers: NZ_CP010055.1, NZ_CP010056.1, NZ_CP010057.1, and NZ_CP010054.1. These accessions provide researchers with the necessary genetic information to explore the bacterium's characteristics further, including its metabolic pathways, potential biotechnological applications, and ecological roles. Biologically, Hymenobacter species are typically found in diverse environments, including soil and water, where they may contribute to nutrient cycling and organic matter decomposition. The traits of Hymenobacter sp. DG25B could indicate its ecological importance in such habitats, as its Gram-negative nature and rod shape may confer advantages in colonization and interaction with other microorganisms. Understanding the specific ecological roles of this bacterium can provide insights into the dynamics of microbial communities and their contributions to environmental processes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter sp. DG25B
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter sp. DG25B chromosome, complete genome.

Gene Summary

Adenine Count

825140 bp

Thymine Count

827985 bp

Guanine Count

1115071 bp

Cytosine Count

1106450 bp

Genome Length

3874646 bp

Protein-coding Genes

3325 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
yihy/virulence factor brkb family proteinPK28_RS21100Not AvailablePositive125931 - 12644919029.5
23s rrna (adenine(2503)-c(2))-methyltransferase rlmnPK28_RS00585Not AvailableNegative126570 - 12764040031.3
thioesterase family proteinPK28_RS00590Not AvailableNegative127757 - 12818516019.3
trna (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase mnmdPK28_RS00595Not AvailablePositive128299 - 12897624803.8
hypothetical proteinPK28_RS20240Not AvailablePositive129051 - 12953018475.4
duf2157 domain-containing proteinPK28_RS00600Not AvailablePositive129612 - 13082943920.8
gdyxxlxy domain-containing proteinPK28_RS00605Not AvailablePositive130826 - 13139521330.1
exbd/tolr family proteinPK28_RS00610Not AvailableNegative131392 - 13191019408.7
5-formyltetrahydrofolate cyclo-ligasePK28_RS00615Not AvailableNegative131994 - 13259323109.9
bacillithiol biosynthesis cysteine-adding enzyme bshcPK28_RS00620Not AvailableNegative132600 - 13419259283.0

Displaying genes 121 – 130 of 3808 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.