Halorubrum sp. Eb13

Rod

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halorubrum

Description

Halorubrum sp. Eb13 is a rod-shaped archaeon characterized by the presence of flagella, which likely contributes to its motility in its natural habitat. This organism possesses a single replicon, suggesting a streamlined genetic organization that may be advantageous for its survival in extreme environments. The accession number for Halorubrum sp. Eb13 is NHPE00000000.1, which provides a reference for genomic data related to this strain. The presence of flagella indicates that Halorubrum sp. Eb13 is adapted to navigating its saline surroundings, which are typical of habitats where Halorubrum species are found, such as hypersaline lakes and salt flats. The ecological adaptability of Halorubrum sp. Eb13 can be significant in its native ecosystems, where it likely plays a role in nutrient cycling and contributes to the microbial community structure. The ability to move through its environment may enhance its access to resources and its interactions with other microorganisms. Understanding the traits of Halorubrum sp. Eb13 provides insight into the evolutionary adaptations of archaea in extreme conditions, highlighting their importance in biodiversity and ecosystem functioning in saline environments.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalorubrum
SpeciesHalorubrum sp. Eb13
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halorubrum sp. Eb13 contig0080, whole genome shotgun sequence.

Gene Summary

Adenine Count

587504 bp

Thymine Count

587572 bp

Guanine Count

1221700 bp

Cytosine Count

1228729 bp

Genome Length

3626705 bp

Protein-coding Genes

3400 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter permeaseDJ75_13025Not AvailableNegative2632994 - 263417843492.2
peptide abc transporter permeaseDJ75_13030Not AvailableNegative2634185 - 263515935736.6
abc transporter substrate-binding proteinDJ75_13035Not AvailableNegative2635193 - 263714572222.5
nyn domain-containing proteinDJ75_13040Not AvailablePositive2637372 - 263786918303.2
succinyl-diaminopimelate desuccinylaseDJ75_13045Not AvailableNegative2637888 - 263912042062.6
diaminopimelate epimeraseDJ75_13050Not AvailableNegative2639117 - 264007332676.9
diaminopimelate decarboxylaseDJ75_13055Not AvailableNegative2640070 - 264150349540.1
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferaseDJ75_13060Not AvailableNegative2641500 - 264233930021.9
4-hydroxy-tetrahydrodipicolinate reductaseDJ75_13065Not AvailableNegative2642397 - 264319727324.4
4-hydroxy-tetrahydrodipicolinate synthaseDJ75_13070Not AvailableNegative2643194 - 264419235595.2

Displaying genes 2511 – 2520 of 3448 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.