Rufibacter sp. DG15C

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Rufibacter

Description

Rufibacter sp. DG15C is characterized by having a single replicon, indicating a streamlined genomic structure. The organism is cataloged under the accession number NZ_CP010776.1, which provides a reference for its genetic material. This bacterium belongs to a genus that often exhibits specific adaptability traits, although detailed physiological characteristics are not specified in the provided data. The presence of a single replicon suggests a potential efficiency in its genetic regulation and replication processes, which could confer advantages in specific environments. Understanding the genomic structure and replicon number of Rufibacter sp. DG15C may offer insights into its ecological roles and potential adaptations. The single replicon could suggest a simpler regulatory mechanism, allowing for rapid responses to environmental changes. This trait may be beneficial in environments where resource availability fluctuates, enabling the organism to thrive under varying conditions. In summary, Rufibacter sp. DG15C's single replicon structure is a notable feature that may reflect its ecological adaptability and efficiency within its habitat, although further research would be required to elucidate the full extent of its biological implications.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusRufibacter
SpeciesRufibacter sp. DG15C
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rufibacter sp. DG15C chromosome, complete genome.

Gene Summary

Adenine Count

1054754 bp

Thymine Count

1049990 bp

Guanine Count

1019561 bp

Cytosine Count

1019433 bp

Genome Length

4143738 bp

Protein-coding Genes

3485 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glucoamylase family proteinTH61_RS03470Not AvailableNegative832437 - 83406260522.3
ragb/susd family nutrient uptake outer membrane proteinTH61_RS03475Not AvailableNegative834213 - 83570355338.1
tonb-dependent receptorTH61_RS03480Not AvailableNegative835709 - 838708109215.0
triple tyrosine motif-containing proteinTH61_RS03485Not AvailableNegative839306 - 842170109078.0
Tmrna,resume consensus sequence (at 89): attatctggcgagtctaaNot AvailableNot AvailablePositive842386 - 842758Not Available
yjjg family noncanonical pyrimidine nucleotidaseTH61_RS03495Not AvailableNegative842893 - 84359727145.6
metalloregulator arsr/smtb family transcription factorTH61_RS03500Not AvailableNegative843720 - 84410615341.8
carboxypeptidase-like regulatory domain-containing proteinTH61_RS03505Not AvailablePositive844191 - 84488325410.7
m1 family metallopeptidaseTH61_RS03515Not AvailableNegative845513 - 84784688929.0
dnaj domain-containing proteinTH61_RS03520Not AvailableNegative847935 - 84857925242.5

Displaying genes 691 – 700 of 3539 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.