Rufibacter sp. DG15C

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Rufibacter

Description

Rufibacter sp. DG15C is characterized by having a single replicon, indicating a streamlined genomic structure. The organism is cataloged under the accession number NZ_CP010776.1, which provides a reference for its genetic material. This bacterium belongs to a genus that often exhibits specific adaptability traits, although detailed physiological characteristics are not specified in the provided data. The presence of a single replicon suggests a potential efficiency in its genetic regulation and replication processes, which could confer advantages in specific environments. Understanding the genomic structure and replicon number of Rufibacter sp. DG15C may offer insights into its ecological roles and potential adaptations. The single replicon could suggest a simpler regulatory mechanism, allowing for rapid responses to environmental changes. This trait may be beneficial in environments where resource availability fluctuates, enabling the organism to thrive under varying conditions. In summary, Rufibacter sp. DG15C's single replicon structure is a notable feature that may reflect its ecological adaptability and efficiency within its habitat, although further research would be required to elucidate the full extent of its biological implications.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusRufibacter
SpeciesRufibacter sp. DG15C
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rufibacter sp. DG15C chromosome, complete genome.

Gene Summary

Adenine Count

1054754 bp

Thymine Count

1049990 bp

Guanine Count

1019561 bp

Cytosine Count

1019433 bp

Genome Length

4143738 bp

Protein-coding Genes

3485 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinTH61_RS02095Not AvailablePositive478073 - 47920640768.2
duf1801 domain-containing proteinTH61_RS02100Not AvailablePositive479287 - 47969715750.1
methylmalonyl co-a mutase-associated gtpase meabTH61_RS02105Not AvailablePositive479792 - 48077835609.8
duf3857 domain-containing proteinTH61_RS02110Not AvailablePositive480922 - 484698142207.0
site-specific tyrosine recombinase xerdTH61_RS02115Not AvailableNegative484808 - 48570734366.6
type ii 3-dehydroquinate dehydrataseTH61_RS02125Not AvailablePositive486221 - 48667917096.5
aminotransferase class v-fold plp-dependent enzymeTH61_RS02130Not AvailablePositive486838 - 48790540682.1
marc family proteinTH61_RS02135Not AvailablePositive488096 - 48866820665.5
carboxypeptidase-like regulatory domain-containing proteinTH61_RS02140Not AvailablePositive488749 - 48957330255.6
ribonuclease hiTH61_RS02145Not AvailablePositive489754 - 49021517271.7

Displaying genes 421 – 430 of 3539 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.