Rufibacter sp. DG15C

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Rufibacter

Description

Rufibacter sp. DG15C is characterized by having a single replicon, indicating a streamlined genomic structure. The organism is cataloged under the accession number NZ_CP010776.1, which provides a reference for its genetic material. This bacterium belongs to a genus that often exhibits specific adaptability traits, although detailed physiological characteristics are not specified in the provided data. The presence of a single replicon suggests a potential efficiency in its genetic regulation and replication processes, which could confer advantages in specific environments. Understanding the genomic structure and replicon number of Rufibacter sp. DG15C may offer insights into its ecological roles and potential adaptations. The single replicon could suggest a simpler regulatory mechanism, allowing for rapid responses to environmental changes. This trait may be beneficial in environments where resource availability fluctuates, enabling the organism to thrive under varying conditions. In summary, Rufibacter sp. DG15C's single replicon structure is a notable feature that may reflect its ecological adaptability and efficiency within its habitat, although further research would be required to elucidate the full extent of its biological implications.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusRufibacter
SpeciesRufibacter sp. DG15C
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rufibacter sp. DG15C chromosome, complete genome.

Gene Summary

Adenine Count

1054754 bp

Thymine Count

1049990 bp

Guanine Count

1019561 bp

Cytosine Count

1019433 bp

Genome Length

4143738 bp

Protein-coding Genes

3485 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
wbqc family proteinTH61_RS01655Not AvailablePositive378328 - 37893323734.6
atp-dependent clp protease atp-binding subunitTH61_RS01660Not AvailablePositive379041 - 38164196474.7
acyl-coa carboxylase subunit betaTH61_RS01665Not AvailablePositive381873 - 38343556496.8
m42 family metallopeptidaseTH61_RS01670Not AvailablePositive383514 - 38458439979.6
gnat family n-acetyltransferaseTH61_RS01675Not AvailablePositive384706 - 38527222212.2
abc transporter substrate-binding proteinTH61_RS01680Not AvailablePositive385436 - 38620628961.4
duf4142 domain-containing proteinTH61_RS01685Not AvailableNegative386290 - 38683219928.9
3-phosphoshikimate 1-carboxyvinyltransferaseTH61_RS01690Not AvailableNegative387345 - 38858344692.7
3-dehydroquinate synthaseTH61_RS01695Not AvailableNegative388580 - 38962038935.2
bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type iiTH61_RS01700Not AvailableNegative389685 - 39077041058.6

Displaying genes 331 – 340 of 3539 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.