Spirosoma radiotolerans str. DG5A

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Cytophagaceae

Genus

Spirosoma

Description

Spirosoma radiotolerans strain DG5A is characterized by the presence of flagella, which are important for its motility in various environments. This bacterium contains a single replicon, indicating a streamlined genomic organization that may facilitate efficient replication and cellular processes. The strain is cataloged under the accession number NZ_CP010429.1, which provides a reference for its genomic data in biological databases. The presence of flagella in Spirosoma radiotolerans suggests that this organism may have adaptations for navigating through its ecological niche, which could involve interactions with various substrates or other microorganisms. The ability to move actively can be advantageous for accessing nutrients or evading unfavorable conditions in its environment. Understanding the specific traits of Spirosoma radiotolerans str. DG5A aids in elucidating its ecological role, particularly in contexts where motility is crucial for survival and competitive advantage. Its single replicon may indicate a specialization that allows it to thrive in specific habitats, which could include environments with radiation exposure, given the species designation. Overall, these traits contribute to our knowledge of the ecological dynamics and adaptability of Spirosoma radiotolerans within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCytophagaceae
GenusSpirosoma
SpeciesSpirosoma radiotolerans
StrainDG5A

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Spirosoma radiotolerans strain DG5A chromosome, complete genome.

Gene Summary

Adenine Count

1774547 bp

Thymine Count

1777228 bp

Guanine Count

1737712 bp

Cytosine Count

1739865 bp

Genome Length

7029352 bp

Protein-coding Genes

5726 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
leucine--trna ligaseSD10_RS11040Q11VK7Positive2717631 - 2720501109120.0
llm class flavin-dependent oxidoreductaseSD10_RS11045P0ADV6Negative2720724 - 272174036805.0
m48 family metallopeptidaseSD10_RS11050Not AvailablePositive2721963 - 272409281533.4
glycerophosphodiester phosphodiesterase family proteinSD10_RS11055Not AvailablePositive2724128 - 272502433215.1
duf2809 domain-containing proteinSD10_RS11060O35027Positive2725045 - 272544615237.0
nad(p)-dependent oxidoreductaseSD10_RS11065Not AvailableNegative2725632 - 272627622904.2
rrf2 family transcriptional regulatorSD10_RS11070P71036Negative2726340 - 272674714836.0
carbon-nitrogen hydrolase family proteinSD10_RS11075P54608Negative2726923 - 272852160953.8
low specificity l-threonine aldolaseSD10_RS11080O07051Negative2728590 - 272961537203.1
ompa family proteinSD10_RS11085Not AvailablePositive2729854 - 273081334864.7

Displaying genes 2241 – 2250 of 5776 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

247 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 247 metabolites

Health Effects

No health effects information available for this bacterium.