Pseudomonas sp. CC120222-01a

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. CC120222-01a is characterized by possessing a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and gene expression. This trait is often associated with certain environmental adaptations, enabling the bacterium to thrive in diverse ecological niches. The accession number for this strain is QEQQ00000000.1, which serves as a unique identifier for it in genomic databases, allowing for further study and comparison with other strains of Pseudomonas. This species belongs to the Pseudomonadaceae family, known for its metabolic versatility and ability to degrade a wide range of organic compounds. Pseudomonas species are typically found in soil, water, and plant environments, where they play significant roles in nutrient cycling and organic matter decomposition. The ecological insights gained from studying Pseudomonas sp. CC120222-01a can contribute to our understanding of microbial interactions in these habitats, particularly regarding their role in bioremediation processes. The ability of Pseudomonas to metabolize various substrates makes it a candidate for applications in environmental cleanup, particularly in contaminated sites. Overall, the characteristics of Pseudomonas sp. CC120222-01a highlight its potential importance in both ecological dynamics and biotechnological applications, emphasizing the relevance of further research on this strain and its relatives within the Pseudomonas genus.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. CC120222-01a
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. CC120222-01a
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. CC120222-01a N430DRAFT_scaffold00062.62, whole

Gene Summary

Adenine Count

1160457 bp

Thymine Count

1157332 bp

Guanine Count

1943184 bp

Cytosine Count

1956531 bp

Genome Length

6217874 bp

Protein-coding Genes

5508 genes

Non-Coding Genes

164 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
translation initiation factor 1 (bif-1)N430_00211Not AvailablePositive212059 - 2122778303.06
Ncrna_class:antisense_rnaNot AvailableNot AvailablePositive212307 - 212396Not Available
atp-dependent clp protease atp-binding subunit clpaN430_00212Not AvailableNegative212443 - 21471383266.7
atp-dependent clp protease adaptor protein clpsN430_00213Not AvailableNegative214744 - 2149899362.29
cspa family cold shock proteinN430_00214Not AvailablePositive215337 - 2156039248.91
isocitrate dehydrogenase (nadp)N430_00215Not AvailableNegative215674 - 21693045531.9
isocitrate dehydrogenaseN430_00216Not AvailablePositive217344 - 21956979919.4
adp-ribose pyrophosphatase yjhb (nudix family)N430_00217Not AvailablePositive219774 - 22021416656.7
trna (5-methylaminomethyl-2-thiouridylate)-methyltransferaseN430_00218Not AvailablePositive220274 - 22139841599.3
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive220567 - 220926Not Available

Displaying genes 321 – 330 of 5672 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.