Thioclava pacifica DSM 10166

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Thioclava

Description

Thioclava pacifica DSM 10166 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. It thrives optimally at a temperature of 37°C, placing it within the mesophilic temperature range. This indicates that it is well-suited for growth in moderate temperature environments, which is typical for many microorganisms found in terrestrial and marine ecosystems. The genomic information for Thioclava pacifica includes one replicon, suggesting a streamlined genetic structure that may facilitate efficient replication and adaptation in its environment. The accession number for its genomic data is AUND00000000.1, which provides a reference for further studies and exploration of its genetic and functional attributes. Given its aerobic nature, Thioclava pacifica likely plays a significant role in the biogeochemical cycling of nutrients, particularly in oxygen-rich environments. Its ability to thrive at moderate temperatures and utilize oxygen suggests it may be involved in processes such as organic matter degradation and nutrient recycling in its habitat. The ecological insights gathered from studying this organism could enhance our understanding of microbial communities in marine and possibly other environments, where similar mesophilic, aerobic bacteria contribute to ecosystem functions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusThioclava
SpeciesThioclava pacifica
StrainDSM 10166

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thioclava pacifica DSM 10166 contig9, whole genome shotgun

Gene Summary

Adenine Count

668236 bp

Thymine Count

678230 bp

Guanine Count

1206956 bp

Cytosine Count

1174871 bp

Genome Length

3728293 bp

Protein-coding Genes

3552 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
n-carbamoyl-d-amino acid hydrolaseTP2_13615Not AvailableNegative3387598 - 338850334086.6
hypothetical proteinTP2_13620Not AvailableNegative3388500 - 338973242610.0
diaminopropionate ammonia-lyaseTP2_13625Not AvailableNegative3389729 - 339096442727.5
c4-dicarboxylate abc transporter substrate-binding proteinTP2_13630Not AvailableNegative3391052 - 339208937246.5
c4-dicarboxylate abc transporter permeaseTP2_13635Not AvailableNegative3392130 - 339341344774.1
hypothetical proteinTP2_13640Not AvailableNegative3393413 - 339394319777.8
hypothetical proteinTP2_13645Not AvailablePositive3394042 - 339491130909.2
catalase-peroxidaseTP2_13650Not AvailableNegative3395008 - 339718279514.4
hypothetical proteinTP2_13655Not AvailablePositive3397697 - 339976074766.9
hypothetical proteinTP2_13660Not AvailablePositive3399757 - 340037121212.3

Displaying genes 3321 – 3330 of 3613 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.