Sphingobium ummariense RL-3

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium ummariense RL-3 is a Gram-negative, aerobic bacterium characterized by its rod shape and non-motile nature, despite having true flagella. This species thrives optimally at a temperature of 29°C and is classified as mesophilic, indicating it grows best in moderate temperature ranges. Notably, S. ummariense RL-3 is non-spore-forming and possesses a single replicon, which may have implications for its genetic stability and replication process. The presence of true flagella, despite its non-motile classification, may suggest a potential for limited movement or influence in its environment under specific conditions. The aerobic nature of S. ummariense RL-3 indicates that it relies on oxygen for metabolic processes, which can affect its ecological role in various environments, particularly those rich in organic material where oxygen is available. Understanding the traits of Sphingobium ummariense RL-3 provides insight into its ecological niche and potential applications in bioremediation or environmental microbiology. Its ability to thrive in aerobic conditions at moderate temperatures may allow it to play a significant role in the degradation of organic pollutants in various ecosystems. Accessions data, such as AUWY00000000.1, may facilitate further research and exploration of its genetic and functional characteristics, contributing to our understanding of microbial diversity and ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium ummariense
StrainRL-3

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingobium ummariense RL-3
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium ummariense RL-3 contig139, whole genome shotgun

Gene Summary

Adenine Count

831480 bp

Thymine Count

831934 bp

Guanine Count

1547934 bp

Cytosine Count

1542693 bp

Genome Length

4754053 bp

Protein-coding Genes

4608 genes

Non-Coding Genes

104 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinM529_08780Not AvailablePositive1726640 - 1729564108848.0
hypothetical proteinM529_08785Not AvailablePositive1729654 - 173025622982.7
conjugal transfer protein tragM529_08790Not AvailablePositive1730189 - 173163452260.6
hypothetical proteinM529_08795Not AvailablePositive1731711 - 173214216263.4
plasmid replication initiator repaM529_08800Not AvailablePositive1733012 - 173412442000.3
hypothetical proteinM529_08805Not AvailableNegative1734188 - 173450210868.0
paraM529_08810Not AvailableNegative1734499 - 173515222798.1
transcription elongation protein sprtM529_08815Not AvailableNegative1735279 - 173592022584.1
dna damage-inducible proteinM529_08820Not AvailablePositive1736335 - 173661610314.4
translation repressor releM529_08825Not AvailablePositive1736585 - 173690512212.5

Displaying genes 1761 – 1770 of 4712 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.