Clostridium saccharobutylicum DSM 13864

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium saccharobutylicum DSM 13864 is an anaerobic bacterium, meaning it thrives in environments devoid of oxygen. This trait is significant as it influences its metabolic processes and ecological niche. The organism has a single replicon, which contributes to its genetic stability and replication efficiency. The genome of C. saccharobutylicum DSM 13864 is accessible under the accession number NC_022571.1, providing a resource for researchers interested in the genetic and functional characteristics of this species. C. saccharobutylicum is known for its ability to ferment sugars, producing butyric acid and other fermentation products. This process is of interest in various biotechnological applications, including biofuel production and the development of bioprocesses for converting biomass into valuable chemicals. Its anaerobic nature allows it to occupy ecological niches where oxygen is limited, such as in decaying organic matter or anaerobic digesters. The ecological insight provided by studying C. saccharobutylicum DSM 13864 lies in its role in the carbon cycle and its potential for sustainable practices. By utilizing fermentative pathways to convert organic substrates into useful products, this bacterium contributes to the recycling of nutrients in anaerobic environments. Understanding its metabolic capabilities can offer strategies for enhancing biomass conversion processes, making it a valuable organism in the context of environmental microbiology and industrial biotechnology.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium saccharobutylicum
StrainDSM 13864

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium saccharobutylicum DSM 13864, complete sequence.

Gene Summary

Adenine Count

1825229 bp

Thymine Count

1818564 bp

Guanine Count

735712 bp

Cytosine Count

728309 bp

Genome Length

5107814 bp

Protein-coding Genes

4309 genes

Non-Coding Genes

237 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna topoisomerase (atp-hydrolyzing) subunit bCLSA_RS00030Not AvailablePositive4539 - 644671294.2
dna gyrase subunit aCLSA_RS00035Not AvailablePositive6470 - 896292567.8
16s ribosomal rnaNot AvailableNot AvailablePositive9508 - 11020Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive11262 - 14171Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive14281 - 14397Not Available
Trna-metNot AvailableNot AvailablePositive14406 - 14482Not Available
Trna-alaNot AvailableNot AvailablePositive14484 - 14559Not Available
hd domain-containing proteinCLSA_RS00065Not AvailablePositive14652 - 1516120107.6
transcription repressor nadrCLSA_RS00070Not AvailablePositive15273 - 1578519222.6
nad(p)/fad-dependent oxidoreductaseCLSA_RS00075Not AvailablePositive15798 - 1719252187.8

Displaying genes 161 – 170 of 4546 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

7 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0014072PectinC6H10O7Chemical structure of Pectin9000-69-5
Average194.1394Da
Monoisotopic194.042652674Da
BASm0014074LevanC18H32O16Chemical structure of Levan9013-95-0
Average504.4371Da
Monoisotopic504.169034976Da
BASm0014077TuranoseC12H22O11Chemical structure of Turanose547-25-1
Average342.2965Da
Monoisotopic342.116211546Da
BASm0014084GlycogenC24H42O21Chemical structure of Glycogen9005-79-2
Average666.5777Da
Monoisotopic666.221858406Da
BASm0014085AmylopectinC30H52O26Chemical structure of Amylopectin9037-22-3
Average828.7183Da
Monoisotopic828.274681836Da
BASm0014086Amylose(C12H20O11)nC2H6Chemical structure of Amylose9005-82-7Not available

Displaying 1–7 of 7 metabolites

Health Effects

No health effects information available for this bacterium.