Limimaricola soesokkakensis

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Limimaricola

Description

Limimaricola soesokkakensis is a Gram-negative, rod-shaped bacterium. It is characterized by having a single replicon, which is indicative of its genomic organization. The taxonomic identification of this organism can be traced through its accession number, FWFY00000000.1, providing a reference point for genomic studies and comparisons with related species. The Gram-negative classification of Limimaricola soesokkakensis suggests that it possesses an outer membrane, which is a distinct feature of bacteria in this group. This outer membrane can confer certain advantages, such as increased resistance to antibiotics and environmental stresses, influencing its ecological interactions. As a member of the microbiological community, Limimaricola soesokkakensis may play a role in various biological processes, including nutrient cycling and ecosystem functioning. The specific ecological niche it occupies and the potential interactions it has with other microorganisms and its environment may provide insights into its significance within microbial communities. Understanding the traits and behaviors of Limimaricola soesokkakensis could contribute to broader research on microbial diversity and the role of bacteria in different habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusLimimaricola
SpeciesLimimaricola soesokkakensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Loktanella soesokkakensis strain CECT 8367 genome assembly,

Gene Summary

Adenine Count

647290 bp

Thymine Count

651764 bp

Guanine Count

1319451 bp

Cytosine Count

1318186 bp

Genome Length

3936691 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hth-type transcriptional regulator yjieLOS8367_02039Not AvailablePositive2093326 - 209422833506.4
ef handLOS8367_02040Not AvailablePositive2094523 - 209496015362.1
xylose import atp-binding protein xylgLOS8367_02041Not AvailableNegative2095092 - 209587127942.9
xylose transport system permease protein xylhLOS8367_02042Not AvailableNegative2095873 - 209699139700.8
periplasmic binding proteins and sugar binding domain of laci family proteinLOS8367_02043Not AvailableNegative2097066 - 209801333280.1
hth-type transcriptional repressor cytrLOS8367_02044Not AvailablePositive2098171 - 209920837252.7
glucose--fructose oxidoreductase precursorLOS8367_02045Not AvailableNegative2099268 - 210042541910.8
inosose dehydrataseLOS8367_02046Not AvailableNegative2100438 - 210133132926.7
glucose-6-phosphate 3-dehydrogenaseLOS8367_02047Not AvailableNegative2101348 - 210245139899.2
3d-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolaseLOS8367_02048Not AvailablePositive2102574 - 210444266954.7

Displaying genes 2051 – 2060 of 3739 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

166 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da

Displaying 1–10 of 166 metabolites

Health Effects

No health effects information available for this bacterium.