Hominimerdicola alba SY3

Gram-positiveCocciNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Hominimerdicola

Description

Hominimerdicola alba SY3 is a Gram-positive, anaerobic cocci bacterium known to inhabit host-associated environments. This organism is characterized by its chain-like cell arrangement and is non-motile, lacking flagella. It maintains a mesophilic temperature range, thriving optimally at moderate temperatures. Hominimerdicola alba SY3 possesses a single replicon and a single membrane, aligning with its classification as a free-living bacterium. Importantly, it does not engage in sporulation, which may influence its survival strategies in fluctuating environmental conditions. This bacterium’s association with host environments suggests potential roles in symbiotic relationships, possibly contributing to the microbial community dynamics within its specific habitats. The absence of mobility could indicate a reliance on host-associated resources for growth and survival, rather than seeking out nutrients independently. Understanding the traits of Hominimerdicola alba SY3 provides insights into its ecological role and potential contributions to the microbiome of its host, highlighting the complex interactions that exist between microorganisms and their environments. As research progresses, further exploration of its biotic relationships may reveal additional functions and benefits it offers to its host or the surrounding microbial ecosystem.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusHominimerdicola
SpeciesHominimerdicola alba
StrainSY3

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Hominimerdicola alba SY3
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus albus SY3 scaffold00004, whole genome shotgun

Gene Summary

Adenine Count

1168979 bp

Thymine Count

1165208 bp

Guanine Count

949536 bp

Cytosine Count

931682 bp

Genome Length

4286476 bp

Protein-coding Genes

3598 genes

Non-Coding Genes

153 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
arginine decarboxylaseRASY3_07765Not AvailablePositive1652230 - 165367552852.6
hypothetical proteinRASY3_07770Not AvailablePositive1653689 - 165420419588.3
hypothetical proteinRASY3_07775Not AvailablePositive1654227 - 16544789077.15
hypothetical proteinRASY3_07780Not AvailablePositive1654495 - 165491715802.7
hypothetical proteinRASY3_07785Not AvailablePositive1654947 - 165555223118.5
hypothetical proteinRASY3_07790Not AvailablePositive1655621 - 165623523342.7
spermidine synthaseRASY3_07795Not AvailablePositive1656277 - 165712532677.7
hypothetical proteinRASY3_07800Not AvailablePositive1657141 - 165743411127.1
hypothetical proteinRASY3_07805Not AvailablePositive1657520 - 165802619202.3
agmatinaseRASY3_07810Not AvailablePositive1658101 - 165895531758.9

Displaying genes 1511 – 1520 of 3751 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

237 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 237 metabolites

Health Effects

No health effects information available for this bacterium.