Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative hspa9b protein | M099_0907 | Not Available | Negative | 974982 - 975101 | 4496.61 |
| meta domain protein | M099_0908 | Not Available | Negative | 975280 - 976071 | 28655.9 |
| hypothetical protein | M099_0909 | Not Available | Positive | 976313 - 977449 | 43636.1 |
| saccharopine dehydrogenase family protein | M099_0910 | Not Available | Positive | 977533 - 978726 | 44966.5 |
| ahpc/tsa family protein | M099_0911 | Not Available | Positive | 978794 - 979240 | 16910.4 |
| protein reca | M099_0912 | Not Available | Positive | 979253 - 980296 | 37366.7 |
| hypothetical protein | M099_0913 | Not Available | Negative | 980370 - 980966 | 21300.9 |
| starch-binding associating with outer membrane family protein | M099_0914 | Not Available | Negative | 981172 - 982887 | 63842.8 |
| tonb-linked outer membrane, susc/raga family protein | M099_0915 | Not Available | Negative | 982901 - 985864 | 108046.0 |
| bacterial regulatory helix-turn-helix s, arac family protein | M099_0916 | Not Available | Positive | 986182 - 989001 | 107456.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

