Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyridine nucleotide-disulfide oxidoreductase family protein | M099_0867 | Not Available | Negative | 930205 - 932706 | 90757.8 |
| mate efflux family protein | M099_0868 | Not Available | Positive | 932943 - 934292 | 49603.2 |
| hypothetical protein | M099_0869 | Not Available | Positive | 934384 - 934791 | 14546.4 |
| isochorismate synthase family protein | M099_0870 | Not Available | Positive | 934821 - 935930 | 41938.9 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase | M099_0871 | Not Available | Positive | 935957 - 937630 | 62975.0 |
| naphthoate synthase | M099_0872 | Not Available | Positive | 937630 - 938451 | 30339.4 |
| mandelate racemase / muconate lactonizing enzyme, c-terminal domain protein | M099_0873 | Not Available | Positive | 938529 - 939584 | 39848.0 |
| amp-binding enzyme family protein | M099_0874 | Not Available | Positive | 939581 - 940666 | 40588.3 |
| bacterial regulatory helix-turn-helix s, arac family protein | M099_0875 | Not Available | Positive | 940922 - 941806 | 34283.2 |
| hypothetical protein | M099_0876 | Not Available | Negative | 941869 - 942045 | 6921.42 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

