Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | 3975 RP4 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1474624 bp
Thymine Count
1407491 bp
Guanine Count
1006342 bp
Cytosine Count
1101240 bp
Genome Length
4989697 bp
Protein-coding Genes
4567 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| apurinic endonuclease family protein | M099_0847 | Not Available | Negative | 905176 - 906012 | 31411.4 |
| porin subfamily protein | M099_0848 | Not Available | Negative | 906055 - 907344 | 48123.5 |
| Trna-glu | Not Available | Not Available | Positive | 907487 - 907561 | Not Available |
| hypothetical protein | M099_0850 | Not Available | Positive | 907599 - 907769 | 6354.81 |
| putative transposase | M099_0851 | Not Available | Positive | 908251 - 908502 | 9706.84 |
| transposase is66 family protein | M099_0852 | Not Available | Positive | 908589 - 910154 | 60524.4 |
| thioredoxin family protein | M099_0853 | Not Available | Negative | 910448 - 911629 | 43765.7 |
| starch-binding associating with outer membrane family protein | M099_0854 | Not Available | Negative | 911648 - 913051 | 52643.2 |
| tonb-linked outer membrane, susc/raga family protein | M099_0855 | Not Available | Negative | 913081 - 916290 | 120067.0 |
| bacterial regulatory helix-turn-helix s, arac family protein | M099_0856 | Not Available | Negative | 916525 - 918342 | 70609.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

